View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11557A_low_2 (Length: 666)

Name: NF11557A_low_2
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11557A_low_2
NF11557A_low_2
[»] chr5 (19 HSPs)
chr5 (10-494)||(6807809-6808289)
chr5 (94-303)||(6818193-6818400)
chr5 (500-666)||(6807611-6807777)
chr5 (530-666)||(6814396-6814532)
chr5 (579-666)||(6823593-6823680)
chr5 (330-494)||(27809640-27809806)
chr5 (289-403)||(2897948-2898062)
chr5 (428-494)||(21038995-21039061)
chr5 (330-469)||(10283964-10284101)
chr5 (292-381)||(2899055-2899144)
chr5 (330-403)||(17644770-17644843)
chr5 (292-379)||(22965735-22965822)
chr5 (330-381)||(42057524-42057575)
chr5 (323-381)||(12937430-12937487)
chr5 (436-494)||(27808690-27808748)
chr5 (296-368)||(1918910-1918981)
chr5 (291-351)||(16930210-16930270)
chr5 (293-381)||(16931241-16931329)
chr5 (458-494)||(21038114-21038150)
[»] chr1 (6 HSPs)
chr1 (292-494)||(45423183-45423384)
chr1 (293-366)||(48898883-48898956)
chr1 (291-494)||(45422873-45423075)
chr1 (330-366)||(16002642-16002678)
chr1 (464-494)||(7999259-7999289)
chr1 (431-488)||(47357342-47357399)
[»] chr8 (7 HSPs)
chr8 (292-494)||(8816467-8816668)
chr8 (430-494)||(14109776-14109840)
chr8 (323-403)||(42000639-42000719)
chr8 (417-461)||(14112735-14112779)
chr8 (291-351)||(21544422-21544482)
chr8 (291-351)||(36318507-36318567)
chr8 (462-494)||(42001712-42001744)
[»] chr6 (7 HSPs)
chr6 (293-494)||(26839120-26839320)
chr6 (414-494)||(4222625-4222705)
chr6 (419-494)||(4221753-4221828)
chr6 (414-494)||(26837963-26838043)
chr6 (291-354)||(33203472-33203535)
chr6 (289-381)||(22019603-22019695)
chr6 (447-494)||(12776234-12776281)
[»] chr3 (4 HSPs)
chr3 (427-494)||(17074585-17074652)
chr3 (292-403)||(48098094-48098205)
chr3 (297-366)||(37460535-37460604)
chr3 (292-381)||(47642749-47642837)
[»] chr4 (7 HSPs)
chr4 (417-494)||(33437550-33437627)
chr4 (414-494)||(31433669-31433744)
chr4 (417-494)||(33436255-33436332)
chr4 (417-494)||(33437769-33437846)
chr4 (330-377)||(55686237-55686284)
chr4 (295-381)||(9617212-9617298)
chr4 (332-381)||(52074633-52074681)
[»] chr2 (6 HSPs)
chr2 (292-366)||(31297640-31297714)
chr2 (323-403)||(15629306-15629385)
chr2 (289-381)||(44329711-44329803)
chr2 (289-403)||(44655332-44655446)
chr2 (330-403)||(3259910-3259983)
chr2 (292-381)||(31298808-31298897)
[»] chr7 (4 HSPs)
chr7 (329-458)||(47610015-47610143)
chr7 (330-403)||(31602876-31602949)
chr7 (443-494)||(47611065-47611116)
chr7 (460-494)||(22929019-22929053)


Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 10 - 494
Target Start/End: Complemental strand, 6808289 - 6807809
Alignment:
Q  10 aagaatatcctattcaacggctgcgggggtgtctttttccatatgggattatggttgacctcaagttccacatacttggttattcaatgttgctttccac 109  Q
    |||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6808289 aagaatatcctattcaccggctgcgggggtgtctttt-ccatatggtattatggttgacctcaagttccacatacttggttattcaatgttgctttccac 6808191  T
Q  110 gagtttggaccttggatagacttacattgaatttaaccgatgaaacaaacttgggcacgtaatgatttattggctaaggtattgtgaggtagatggtcac 209  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  6808190 gagtttgggctttggatagacttacattgaatttaaccgatgaaacaaacttgggcacgtaatgatttaatggctaaggtattgggaggtagatggtcac 6808091  T
Q  210 aatctatcccatctgactggaatttttgcttgagcaagccatcaaactggacttaattgtaaggtgattgaattaagttaaagaaaattgcttttctgaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6808090 aatctatcccatctgactggaatttttgcttgagcaagccatcaaactggacttaattgtaaggtgattgaattaagttaaagaaaattgcttttctgaa 6807991  T
Q  310 atcaaaaatttcatattgttacaagtaaatgatcaaattacctccatcggtagttaattctctctggcatatccaataacagttaactgccgctctgg-c 408  Q
    ||||||||||||||||||  |||||||||||||||||||| | ||| ||||||||||||  ||||||||||||| | ||||||||||||| ||||||| |    
T  6807990 atcaaaaatttcatattgacacaagtaaatgatcaaattatcaccagcggtagttaattgcctctggcatatccgacaacagttaactgctgctctggtc 6807891  T
Q  409 tcaacggtagttaactgtctctggctttgctgctcttaagtgcaattccagttgtgattttacgcgttttggtcaaaaaatcaaaa 494  Q
    |||    |||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||  |||||||||||    
T  6807890 tca----tagttaactgtctctggctttgctgctcttaagtacagtttcagttgtgattttacgcgttttggttgaaaaatcaaaa 6807809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 94 - 303
Target Start/End: Complemental strand, 6818400 - 6818193
Alignment:
Q  94 caatgttgctttccacgagtttggaccttggatagacttacattgaatttaaccgatgaaacaaacttgggcacgtaatgatttattggctaaggtattg 193  Q
    |||||||||| ||||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6818400 caatgttgctgtccacgagtttggactttggata--cttacattaaatttaaccgatgaaacaaacttgggcacgtaatgatttaatggctaaggtattg 6818303  T
Q  194 tgaggtagatggtcacaatctatcccatctgactggaatttttgcttgagcaagccatcaaactggacttaattgtaaggtgattgaattaagttaaaga 293  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6818302 ggaggtagatggtcacaatctatcccatctgactggaatttttgcttgagcaagccatcaaactggacttaattgtaaggtgattgaattaagttaaaga 6818203  T
Q  294 aaattgcttt 303  Q
    ||||||||||    
T  6818202 aaattgcttt 6818193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 500 - 666
Target Start/End: Complemental strand, 6807777 - 6807611
Alignment:
Q  500 aatccaagttatttatatataagcaaaaatcaacatagcatagcactaaaaaaggtagatggatactaagattaagagacatttcgtgttgattcatgga 599  Q
    ||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6807777 aatccaagttatttatatataagcaaaaaccaacacagcagagcactaaaaaaggtagatggatactgagattaagagacatttcgtgttgattcatgga 6807678  T
Q  600 tcttgccatggggcatggtgttggtacaaggttgttactttgttaaaatctgctggacacgatgtca 666  Q
    |||||||||||||||||||||||||||||| || || || |||||||||||||||||||||| ||||    
T  6807677 tcttgccatggggcatggtgttggtacaagattattgctctgttaaaatctgctggacacgaagtca 6807611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 530 - 666
Target Start/End: Complemental strand, 6814532 - 6814396
Alignment:
Q  530 caacatagcatagcactaaaaaaggtagatggatactaagattaagagacatttcgtgttgattcatggatcttgccatggggcatggtgttggtacaag 629  Q
    |||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6814532 caacatagcagagcactaaaaaaggtagatgaatactgagattaagagacatttcgtgttgattcatggatcttgccatggggcatggtgttggtacaag 6814433  T
Q  630 gttgttactttgttaaaatctgctggacacgatgtca 666  Q
     || || || |||||||||||||||||||||| ||||    
T  6814432 attattgctctgttaaaatctgctggacacgaagtca 6814396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 579 - 666
Target Start/End: Complemental strand, 6823680 - 6823593
Alignment:
Q  579 catttcgtgttgattcatggatcttgccatggggcatggtgttggtacaaggttgttactttgttaaaatctgctggacacgatgtca 666  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||| |  ||||| |||||||||||||||||||||| ||||    
T  6823680 catttcgtgttggttcatggagcttgccatggggcatggtgttggtacaagataattactctgttaaaatctgctggacacgaagtca 6823593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 330 - 494
Target Start/End: Complemental strand, 27809806 - 27809640
Alignment:
Q  330 acaagtaaatgatcaaattacctccatcggtagttaattctctctggcatatccaataacagttaactgccgctctggct----caacggtagttaactg 425  Q
    |||||||||||||||||||||| ||  |||||||||| |  ||||||||||||||  | |||||||||||| ||  ||||    ||  |  |||||| ||    
T  27809806 acaagtaaatgatcaaattacccccgacggtagttaactgcctctggcatatccagcagcagttaactgccact--ggctactccagagacagttaattg 27809709  T
Q  426 tctctggctttgctgctcttaagtgcaattccagttgtgattttacgcgttttggtcaaaaaatcaaaa 494  Q
    ||| ||||||||||||| || | |||||||  |||||| |||||||||||||||||| |||||||||||    
T  27809708 tctttggctttgctgctttttaatgcaattttagttgtaattttacgcgttttggtcgaaaaatcaaaa 27809640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 289 - 403
Target Start/End: Original strand, 2897948 - 2898062
Alignment:
Q  289 aaagaaaattgcttttctgaaatcaaaaatttcatattgttacaagtaaatgatcaaattacctccatcggtagttaattctctctggcatatccaataa 388  Q
    ||||| |||||||||| ||| ||  || ||||| |||||  |||||||||||| ||||||||||||| |||||||||| |  ||||||||||| |   ||    
T  2897948 aaagagaattgcttttttgacattgaatatttcctattgacacaagtaaatgaccaaattacctccagcggtagttaactgcctctggcatatgcgccaa 2898047  T
Q  389 cagttaactgccgct 403  Q
    |||||||||||||||    
T  2898048 cagttaactgccgct 2898062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 428 - 494
Target Start/End: Complemental strand, 21039061 - 21038995
Alignment:
Q  428 tctggctttgctgctcttaagtgcaattccagttgtgattttacgcgttttggtcaaaaaatcaaaa 494  Q
    ||||| |||||||| |||||||||| ||| |||||||||||||||||||| |||  |||||||||||    
T  21039061 tctggttttgctgcacttaagtgcagttctagttgtgattttacgcgtttcggttgaaaaatcaaaa 21038995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 330 - 469
Target Start/End: Original strand, 10283964 - 10284101
Alignment:
Q  330 acaagtaaatgatcaaattacctccatcggtagttaattctctctggcatatccaataacagttaactgccgctctggct-caacggtagttaactgtct 428  Q
    |||||||||||||||||||| || || | |||||||| |  ||||||||||||| | |||||||||||| ||  |||||| ||  |  ||| ||||| ||    
T  10283964 acaagtaaatgatcaaatta-cttcaacagtagttaactgcctctggcatatccgaaaacagttaactgtcg--ctggctccagagacagtaaactgcct 10284060  T
Q  429 ctggctttgctgctcttaagtgcaattccagttgtgatttt 469  Q
    ||||| ||||||| ||||||||||||| |||||| ||||||    
T  10284061 ctggcgttgctgcacttaagtgcaatttcagttgagatttt 10284101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 292 - 381
Target Start/End: Complemental strand, 2899144 - 2899055
Alignment:
Q  292 gaaaattgcttttctgaaatcaaaaatttcatattgttacaagtaaatgatcaaattacctccatcggtagttaattctctctggcatat 381  Q
    |||||||| |||| ||| ||  || ||||| |||||  |||||||||||||||||||| | ||| |||||||||| | ||||||||||||    
T  2899144 gaaaattgtttttttgacattgaatatttcctattgacacaagtaaatgatcaaattatccccagcggtagttaaatgtctctggcatat 2899055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 330 - 403
Target Start/End: Original strand, 17644770 - 17644843
Alignment:
Q  330 acaagtaaatgatcaaattacctccatcggtagttaattctctctggcatatccaataacagttaactgccgct 403  Q
    |||||||||||||||||||||| || ||||||||||| |  ||||||||||| |    ||||||||||||||||    
T  17644770 acaagtaaatgatcaaattacccccgtcggtagttaactgcctctggcatatgcgccgacagttaactgccgct 17644843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 292 - 379
Target Start/End: Complemental strand, 22965822 - 22965735
Alignment:
Q  292 gaaaattgcttttctgaaatcaaaaatttcatattgttacaagtaaatgatcaaattacctccatcggtagttaattctctctggcat 379  Q
    ||||||||||||| ||| ||  || | ||| |||||  |||||||||||||||||||||  |||||||||||||| |  |||||||||    
T  22965822 gaaaattgcttttttgacattgaatacttcctattgacacaagtaaatgatcaaattactcccatcggtagttaactgcctctggcat 22965735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 330 - 381
Target Start/End: Complemental strand, 42057575 - 42057524
Alignment:
Q  330 acaagtaaatgatcaaattacctccatcggtagttaattctctctggcatat 381  Q
    ||||||||||||||||||||| ||||||| ||||||| |  |||||||||||    
T  42057575 acaagtaaatgatcaaattacttccatcgatagttaactgcctctggcatat 42057524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 323 - 381
Target Start/End: Complemental strand, 12937487 - 12937430
Alignment:
Q  323 tattgttacaagtaaatgatcaaattacctccatcggtagttaattctctctggcatat 381  Q
    ||||| |||||||||||||| |||||||| ||| |||||||||| | ||||||||||||    
T  12937487 tattgatacaagtaaatgataaaattacc-ccaacggtagttaactgtctctggcatat 12937430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 436 - 494
Target Start/End: Original strand, 27808690 - 27808748
Alignment:
Q  436 tgctgctcttaagtgcaattccagttgtgattttacgcgttttggtcaaaaaatcaaaa 494  Q
    ||||||| || ||| || |||||||||||||||||||||||| ||||  ||||||||||    
T  27808690 tgctgctttttagtccagttccagttgtgattttacgcgtttcggtcttaaaatcaaaa 27808748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 296 - 368
Target Start/End: Original strand, 1918910 - 1918981
Alignment:
Q  296 attgcttttctgaaatcaaaaatttcatattgttacaagtaaatgatcaaattacctccatcggtagttaatt 368  Q
    ||||||||||||| |||||||| |||||||||  ||| | |||||| ||||||||| ||| ||||| ||||||    
T  1918910 attgcttttctgacatcaaaaaattcatattgacacatggaaatgaccaaattacc-ccagcggtaattaatt 1918981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 351
Target Start/End: Original strand, 16930210 - 16930270
Alignment:
Q  291 agaaaattgcttttctgaaatcaaaaatttcatattgttacaagtaaatgatcaaattacc 351  Q
    ||||||||||||||| || ||  |||| ||| |||||  ||||||||||||||||||||||    
T  16930210 agaaaattgcttttcagatatagaaaacttcctattgacacaagtaaatgatcaaattacc 16930270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 293 - 381
Target Start/End: Complemental strand, 16931329 - 16931241
Alignment:
Q  293 aaaattgcttttctgaaatcaaaaatttcatattgttacaagtaaatgatcaaattacctccatcggtagttaattctctctggcatat 381  Q
    |||||||||||| ||| ||  || ||||| |||||  | |||||||||| ||||||||| ||| |||||||||| |  |||||||||||    
T  16931329 aaaattgcttttttgacatagaatatttcctattgacataagtaaatgaccaaattacccccagcggtagttaactgcctctggcatat 16931241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 458 - 494
Target Start/End: Original strand, 21038114 - 21038150
Alignment:
Q  458 agttgtgattttacgcgttttggtcaaaaaatcaaaa 494  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  21038114 agttgtgattttacgcatttcggtcaaaaaatcaaaa 21038150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 8e-32; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 292 - 494
Target Start/End: Complemental strand, 45423384 - 45423183
Alignment:
Q  292 gaaaattgcttttctgaaatcaaaaatttcatattgttacaagtaaatgatcaaattacctccatcggtagttaattctctctggcatatccaataacag 391  Q
    ||||||||||||||||| |||||||| |||| ||||  |||||||||||| ||||||||| ||  ||| |||||| | ||||||||||||||   | |||    
T  45423384 gaaaattgcttttctgacatcaaaaagttcacattgacacaagtaaatgaccaaattaccccccgcggcagttaactgtctctggcatatccggcatcag 45423285  T
Q  392 ttaactgccgctctggctcaacggtagttaactgtctctggctttgctgctcttaagtgcaattccagttgtgattttacgcgttttggtcaaaaaatca 491  Q
    ||||||||||||  | | ||  |||||||||||| ||||||||||||||| ||||||| || ||| |||||||| ||||||| ||| | || ||||||||    
T  45423284 ttaactgccgct-ggccccagaggtagttaactgcctctggctttgctgcacttaagtccagttctagttgtgactttacgcatttcgttcgaaaaatca 45423186  T
Q  492 aaa 494  Q
    |||    
T  45423185 aaa 45423183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 293 - 366
Target Start/End: Original strand, 48898883 - 48898956
Alignment:
Q  293 aaaattgcttttctgaaatcaaaaatttcatattgttacaagtaaatgatcaaattacctccatcggtagttaa 366  Q
    |||||||||||||||| |||||| |||||||||||  | |||||||||| |||||||||  |||||||||||||    
T  48898883 aaaattgcttttctgacatcaaatatttcatattgacaaaagtaaatgaccaaattaccctcatcggtagttaa 48898956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 291 - 494
Target Start/End: Original strand, 45422873 - 45423075
Alignment:
Q  291 agaaaattgcttttctgaaatcaaaaatttcatattgttacaagtaaatgatcaaattacctccatcggtagttaattctctctggcatatccaataaca 390  Q
    |||||||||||||||||| || ||||| |||  ||||  |||  ||||||| ||||||| |  || |||||||||| |  |||| ||||||||   | ||    
T  45422873 agaaaattgcttttctgacattaaaaaattcgcattgacacagataaatgaccaaattatcctcaacggtagttaactgcctcttgcatatccggcagca 45422972  T
Q  391 gttaactgccgctctggctcaacggtagttaactgtctctggctttgctgctcttaagtgcaattccagttgtgattttacgcgttttggtcaaaaaatc 490  Q
    |||||||||||||  | | ||  ||||||||||||  |||| ||||||||| ||||||| || ||| |||||||||||||||  ||| |||| ||| |||    
T  45422973 gttaactgccgctg-gccgcagaggtagttaactgcttctgcctttgctgcacttaagtccagttctagttgtgattttacgtttttcggtcgaaatatc 45423071  T
Q  491 aaaa 494  Q
    ||||    
T  45423072 aaaa 45423075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 330 - 366
Target Start/End: Complemental strand, 16002678 - 16002642
Alignment:
Q  330 acaagtaaatgatcaaattacctccatcggtagttaa 366  Q
    |||||||||||||||||||||||||| ||||||||||    
T  16002678 acaagtaaatgatcaaattacctccagcggtagttaa 16002642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 464 - 494
Target Start/End: Complemental strand, 7999289 - 7999259
Alignment:
Q  464 gattttacgcgttttggtcaaaaaatcaaaa 494  Q
    |||||||||||||||||||||||||||||||    
T  7999289 gattttacgcgttttggtcaaaaaatcaaaa 7999259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 488
Target Start/End: Complemental strand, 47357399 - 47357342
Alignment:
Q  431 ggctttgctgctcttaagtgcaattccagttgtgattttacgcgttttggtcaaaaaa 488  Q
    ||||||||||| |||||||||| |  ||||  ||||||||||||||| ||||||||||    
T  47357399 ggctttgctgcacttaagtgcagtatcagtaatgattttacgcgtttcggtcaaaaaa 47357342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 5e-27; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 292 - 494
Target Start/End: Complemental strand, 8816668 - 8816467
Alignment:
Q  292 gaaaattgcttttctgaaatcaaaaatttcatattgttacaagtaaatgatcaaattacctccatcggtagttaattctctctggcatatccaataacag 391  Q
    ||||||||||||||| | |||||||| |||| ||||  |||| |||||||  |||||||||||| |||||||||| |  ||||| |||||||      ||    
T  8816668 gaaaattgcttttctaacatcaaaaagttcacattgacacaaataaatgactaaattacctccagcggtagttaactgcctctgacatatccggcggtag 8816569  T
Q  392 ttaactgccgctctggctcaacggtagttaactgtctctggctttgctgctcttaagtgcaattccagttgtgattttacgcgttttggtcaaaaaatca 491  Q
    ||||||||||||  | | ||   |||||||| || ||||||||||||||| |||||||||| || ||||||||||||||||||||| |||| ||||||||    
T  8816568 ttaactgccgctg-gccccagaagtagttaattgcctctggctttgctgcacttaagtgcactttcagttgtgattttacgcgtttcggtcgaaaaatca 8816470  T
Q  492 aaa 494  Q
    |||    
T  8816469 aaa 8816467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 430 - 494
Target Start/End: Complemental strand, 14109840 - 14109776
Alignment:
Q  430 tggctttgctgctcttaagtgcaattccagttgtgattttacgcgttttggtcaaaaaatcaaaa 494  Q
    |||||||||||| ||||| || | |||||||| ||||||||||||||| | || |||||||||||    
T  14109840 tggctttgctgcacttaattgaagttccagttttgattttacgcgtttcgatcgaaaaatcaaaa 14109776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 323 - 403
Target Start/End: Original strand, 42000639 - 42000719
Alignment:
Q  323 tattgttacaagtaaatgatcaaattacctccatcggtagttaattctctctggcatatccaataacagttaactgccgct 403  Q
    ||||| ||||||||||||| ||||||||| ||| |||||||||| |  ||||||||||| |  |  |||||||||||||||    
T  42000639 tattgatacaagtaaatgaccaaattacccccaccggtagttaactgcctctggcatatgcgctggcagttaactgccgct 42000719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 14112735 - 14112779
Alignment:
Q  417 agttaactgtctctggctttgctgctcttaagtgcaattccagtt 461  Q
    |||||||||| | |||||||||||| |||||||||||||| ||||    
T  14112735 agttaactgtatatggctttgctgcacttaagtgcaattctagtt 14112779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 351
Target Start/End: Complemental strand, 21544482 - 21544422
Alignment:
Q  291 agaaaattgcttttctgaaatcaaaaatttcatattgttacaagtaaatgatcaaattacc 351  Q
    |||||||||||||||||| ||||| || ||| ||    |||||||||||||||||||||||    
T  21544482 agaaaattgcttttctgacatcaataagttcttaaaaatacaagtaaatgatcaaattacc 21544422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 351
Target Start/End: Original strand, 36318507 - 36318567
Alignment:
Q  291 agaaaattgcttttctgaaatcaaaaatttcatattgttacaagtaaatgatcaaattacc 351  Q
    ||||||||||||||| || |||||||| |||| |||   ||||||||||||| ||||||||    
T  36318507 agaaaattgcttttccgacatcaaaaagttcacattaacacaagtaaatgattaaattacc 36318567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 462 - 494
Target Start/End: Complemental strand, 42001744 - 42001712
Alignment:
Q  462 gtgattttacgcgttttggtcaaaaaatcaaaa 494  Q
    ||||||||||||||||||||| |||||||||||    
T  42001744 gtgattttacgcgttttggtcgaaaaatcaaaa 42001712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 293 - 494
Target Start/End: Complemental strand, 26839320 - 26839120
Alignment:
Q  293 aaaattgcttttctgaaatcaaaaatttcatattgttacaagtaaatgatcaaattacctccatcg--gtagttaattctctctggcatatccaataaca 390  Q
    |||||||||||||||| |||||||| |||| ||||  |||||||||||| |||||||  |||||||  | |||||| |  ||||||||||||| | | ||    
T  26839320 aaaattgcttttctgacatcaaaaagttcacattgacacaagtaaatgaccaaatta--tccatcgcggcagttaactgcctctggcatatccgacatca 26839223  T
Q  391 gttaactgccgctctggctcaacggtagttaactgtctctggctttgctgctcttaagtgcaattccagttgtgattttacgcgttttggtcaaaaaatc 490  Q
    |||||||||||||  | | ||  |||||||||||  ||||| ||||||||| |||||||||| |||||||| ||| ||||||||||| | || |||||||    
T  26839222 gttaactgccgctg-gccccagaggtagttaacttcctctgactttgctgcacttaagtgcagttccagttttgactttacgcgtttcgttcgaaaaatc 26839124  T
Q  491 aaaa 494  Q
    ||||    
T  26839123 aaaa 26839120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 414 - 494
Target Start/End: Complemental strand, 4222705 - 4222625
Alignment:
Q  414 ggtagttaactgtctctggctttgctgctcttaagtgcaattccagttgtgattttacgcgttttggtcaaaaaatcaaaa 494  Q
    |||||||||||| ||||| ||||||||| |||||||||| || ||||||||||||||| ||||| |||| |||||||||||    
T  4222705 ggtagttaactgcctctgactttgctgcacttaagtgcagtttcagttgtgattttacacgtttcggtcgaaaaatcaaaa 4222625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 419 - 494
Target Start/End: Original strand, 4221753 - 4221828
Alignment:
Q  419 ttaactgtctctggctttgctgctcttaagtgcaattccagttgtgattttacgcgttttggtcaaaaaatcaaaa 494  Q
    |||||||  |||||||||||||| |||||||||| ||| | |||||||||||||||||| | || |||||||||||    
T  4221753 ttaactgcatctggctttgctgcacttaagtgcagttctacttgtgattttacgcgtttcgatcgaaaaatcaaaa 4221828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 414 - 494
Target Start/End: Original strand, 26837963 - 26838043
Alignment:
Q  414 ggtagttaactgtctctggctttgctgctcttaagtgcaattccagttgtgattttacgcgttttggtcaaaaaatcaaaa 494  Q
    ||||||||| ||  |||||||||||||| ||||||| || ||| | |||||||||||||||||| |||| ||| |||||||    
T  26837963 ggtagttaattgcttctggctttgctgcacttaagtccagttctaattgtgattttacgcgtttcggtcgaaatatcaaaa 26838043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 291 - 354
Target Start/End: Complemental strand, 33203535 - 33203472
Alignment:
Q  291 agaaaattgcttttctgaaatcaaaaatttcatattgttacaagtaaatgatcaaattacctcc 354  Q
    ||||||| |||||||||| |||||||| |||| ||||  |||||||||||| ||||||||||||    
T  33203535 agaaaatagcttttctgacatcaaaaagttcacattgacacaagtaaatgaccaaattacctcc 33203472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 381
Target Start/End: Complemental strand, 22019695 - 22019603
Alignment:
Q  289 aaagaaaattgcttttctgaaatcaaaaatttcatattgttacaagtaaatgatcaaattacctccatcggtagttaattctctctggcatat 381  Q
    ||||||||||| |||| ||| || ||| ||||| |||||  ||||||||||||  |||||||||||| || ||||||| |  |||||||||||    
T  22019695 aaagaaaattgtttttttgacataaaatatttcctattggcacaagtaaatgactaaattacctccagcgctagttaactacctctggcatat 22019603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 447 - 494
Target Start/End: Original strand, 12776234 - 12776281
Alignment:
Q  447 agtgcaattccagttgtgattttacgcgttttggtcaaaaaatcaaaa 494  Q
    ||||||||| ||||||||||||||| ||||||| || |||||||||||    
T  12776234 agtgcaatttcagttgtgattttacacgttttgatcgaaaaatcaaaa 12776281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 427 - 494
Target Start/End: Complemental strand, 17074652 - 17074585
Alignment:
Q  427 ctctggctttgctgctcttaagtgcaattccagttgtgattttacgcgttttggtcaaaaaatcaaaa 494  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||| |||| |||||||||||    
T  17074652 ctctggctttgctgcacttaagtgcaattccaattgtgattttacgcgtttcggtcgaaaaatcaaaa 17074585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 292 - 403
Target Start/End: Complemental strand, 48098205 - 48098094
Alignment:
Q  292 gaaaattgcttttctgaaatcaaaaatttcatattgttacaagtaaatgatcaaattacctccatcggtagttaattctctctggcatatccaataacag 391  Q
    ||||||||||||||||| ||  || | ||| |||||  |||||||||||| ||||||||||||| | |||||||| |  ||||| ||||| |    ||||    
T  48098205 gaaaattgcttttctgacatagaatacttcctattgacacaagtaaatgaccaaattacctccagcagtagttaactgcctctgacatatgcgccgacag 48098106  T
Q  392 ttaactgccgct 403  Q
    ||||||||||||    
T  48098105 ttaactgccgct 48098094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 366
Target Start/End: Complemental strand, 37460604 - 37460535
Alignment:
Q  297 ttgcttttctgaaatcaaaaatttcatattgttacaagtaaatgatcaaattacctccatcggtagttaa 366  Q
    |||||||||||| ||||||  |||| || ||  ||||||||||||  |||||||||||| ||||||||||    
T  37460604 ttgcttttctgacatcaaatgtttcctaatgacacaagtaaatgacaaaattacctccagcggtagttaa 37460535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 381
Target Start/End: Complemental strand, 47642837 - 47642749
Alignment:
Q  292 gaaaattgcttttctgaaatcaaaaatttcatattgttacaagtaaatgatcaaattacctccatcggtagttaattctctctggcatat 381  Q
    ||||||||||||||||| ||  || | ||| ||||   |||||||||||| ||||||||| ||| |||||||||| | ||||||||||||    
T  47642837 gaaaattgcttttctgacatagaatacttcctattaacacaagtaaatgaccaaattacc-ccagcggtagttaactgtctctggcatat 47642749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 417 - 494
Target Start/End: Complemental strand, 33437627 - 33437550
Alignment:
Q  417 agttaactgtctctggctttgctgctcttaagtgcaattccagttgtgattttacgcgttttggtcaaaaaatcaaaa 494  Q
    |||||||||  |||||||||||||| |||||||||| || ||||||||||||||||||||| |||| |||||||||||    
T  33437627 agttaactgcatctggctttgctgcacttaagtgcagtttcagttgtgattttacgcgtttcggtcgaaaaatcaaaa 33437550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 414 - 494
Target Start/End: Complemental strand, 31433744 - 31433669
Alignment:
Q  414 ggtagttaactgtctctggctttgctgctcttaagtgcaattccagttgtgattttacgcgttttggtcaaaaaatcaaaa 494  Q
    |||||||||||| ||||||||||||||| |||||||     ||||||||||||||||||||||| | ||||||||||||||    
T  31433744 ggtagttaactgcctctggctttgctgcacttaagt-----tccagttgtgattttacgcgtttcgatcaaaaaatcaaaa 31433669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 417 - 494
Target Start/End: Original strand, 33436255 - 33436332
Alignment:
Q  417 agttaactgtctctggctttgctgctcttaagtgcaattccagttgtgattttacgcgttttggtcaaaaaatcaaaa 494  Q
    |||||| || |||| |||||||||| ||||| |||| |||||||| ||||||||||||||| |||| |||||||||||    
T  33436255 agttaattgcctctagctttgctgcacttaaatgcagttccagttatgattttacgcgtttcggtcgaaaaatcaaaa 33436332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 417 - 494
Target Start/End: Complemental strand, 33437846 - 33437769
Alignment:
Q  417 agttaactgtctctggctttgctgctcttaagtgcaattccagttgtgattttacgcgttttggtcaaaaaatcaaaa 494  Q
    |||||||||  |||| ||||||| | |||||||||| || ||||||||||||||||||||| |||| |||||||||||    
T  33437846 agttaactgcatctgcctttgctacacttaagtgcagtttcagttgtgattttacgcgtttcggtcgaaaaatcaaaa 33437769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 330 - 377
Target Start/End: Complemental strand, 55686284 - 55686237
Alignment:
Q  330 acaagtaaatgatcaaattacctccatcggtagttaattctctctggc 377  Q
    |||||||||||||||||||||||||| |||||||||||| || |||||    
T  55686284 acaagtaaatgatcaaattacctccagcggtagttaattgtcgctggc 55686237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 381
Target Start/End: Original strand, 9617212 - 9617298
Alignment:
Q  295 aattgcttttctgaaatcaaaaatttcatattgttacaagtaaatgatcaaattacctccatcggtagttaattctctctggcatat 381  Q
    |||||||||| ||| ||| || | ||| |||||  |||||||||||||||||||||||| | |||||||||| |  |||||||||||    
T  9617212 aattgcttttttgacatcgaatacttcctattgacacaagtaaatgatcaaattacctctagcggtagttaactgcctctggcatat 9617298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 52074681 - 52074633
Alignment:
Q  332 aagtaaatgatcaaattacctccatcggtagttaattctctctggcatat 381  Q
    |||||||||||||||||||| ||| |||||||||||| ||||||||||||    
T  52074681 aagtaaatgatcaaattacc-ccagcggtagttaattgtctctggcatat 52074633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 292 - 366
Target Start/End: Original strand, 31297640 - 31297714
Alignment:
Q  292 gaaaattgcttttctgaaatcaaaaatttcatattgttacaagtaaatgatcaaattacctccatcggtagttaa 366  Q
    ||||||||||||||||| ||  || | ||| |||||  |||||||||||||||||||||||||| ||||||||||    
T  31297640 gaaaattgcttttctgacatagaatacttcctattgacacaagtaaatgatcaaattacctccaacggtagttaa 31297714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 323 - 403
Target Start/End: Original strand, 15629306 - 15629385
Alignment:
Q  323 tattgttacaagtaaatgatcaaattacctccatcggtagttaattctctctggcatatccaataacagttaactgccgct 403  Q
    ||||| ||||||||||||||||||||| ||||| || ||||||| |  ||||||||||| ||   ||||||||||||||||    
T  15629306 tattgatacaagtaaatgatcaaatta-ctccagcgatagttaactgcctctggcatatgcaccgacagttaactgccgct 15629385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 381
Target Start/End: Complemental strand, 44329803 - 44329711
Alignment:
Q  289 aaagaaaattgcttttctgaaatcaaaaatttcatattgttacaagtaaatgatcaaattacctccatcggtagttaattctctctggcatat 381  Q
    ||||||||||| |||| ||| || ||| ||||| |||||  ||||||||||||  |||||||||||| || ||||||| |  |||||||||||    
T  44329803 aaagaaaattgtttttttgacataaaatatttcctattggcacaagtaaatgactaaattacctccagcgctagttaactacctctggcatat 44329711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 289 - 403
Target Start/End: Original strand, 44655332 - 44655446
Alignment:
Q  289 aaagaaaattgcttttctgaaatcaaaaatttcatattgttacaagtaaatgatcaaattacctccatcggtagttaattctctctggcatatccaataa 388  Q
    ||||||||||| |||| ||| ||  || | ||| ||||| || || |||||||||||||||| |||| |||||||||| |  ||||||||||| |    |    
T  44655332 aaagaaaattgtttttttgatatagaatacttcctattgatataaataaatgatcaaattacttccagcggtagttaactgcctctggcatatgcgccga 44655431  T
Q  389 cagttaactgccgct 403  Q
    |||||||||||||||    
T  44655432 cagttaactgccgct 44655446  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 403
Target Start/End: Original strand, 3259910 - 3259983
Alignment:
Q  330 acaagtaaatgatcaaattacctccatcggtagttaattctctctggcatatccaataacagttaactgccgct 403  Q
    |||||||||||| ||||||||| ||| |||||||||| |  ||||||||||| |    ||||||||||||||||    
T  3259910 acaagtaaatgaccaaattacccccagcggtagttaactgcctctggcatatgcgccgacagttaactgccgct 3259983  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 381
Target Start/End: Complemental strand, 31298897 - 31298808
Alignment:
Q  292 gaaaattgcttttctgaaatcaaaaatttcatattgttacaagtaaatgatcaaattacctccatcggtagttaattctctctggcatat 381  Q
    ||||||||||||| ||| ||  |||| ||| |||||  |||||||||||| ||||||||  ||| |||||||||| |  |||||||||||    
T  31298897 gaaaattgcttttttgatatagaaaacttcctattgacacaagtaaatgaccaaattactcccagcggtagttaactgcctctggcatat 31298808  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 329 - 458
Target Start/End: Original strand, 47610015 - 47610143
Alignment:
Q  329 tacaagtaaatgatcaaattacctccatcggtagttaattctctctggcatatccaataacagttaactgccgctctggctcaac-ggtagttaactgtc 427  Q
    ||||| ||||| |||||||||| |||| ||||| |||| |  |||||||||||||   |||| ||||||||||||  ||||| |  ||| |||||||| |    
T  47610015 tacaattaaataatcaaattacttccagcggtaattaactgcctctggcatatccggaaacaattaactgccgct--ggctccagaggttgttaactgcc 47610112  T
Q  428 tctggctttgctgctcttaagtgcaattcca 458  Q
    |||| ||||||||  ||||||||||||||||    
T  47610113 tctgcctttgctgaacttaagtgcaattcca 47610143  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 330 - 403
Target Start/End: Complemental strand, 31602949 - 31602876
Alignment:
Q  330 acaagtaaatgatcaaattacctccatcggtagttaattctctctggcatatccaataacagttaactgccgct 403  Q
    |||||||||||||||||||||| ||| |||||||||| |  ||||||||||| |    ||||||||||||||||    
T  31602949 acaagtaaatgatcaaattacccccagcggtagttaactgcctctggcatatgcgccgacagttaactgccgct 31602876  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 443 - 494
Target Start/End: Complemental strand, 47611116 - 47611065
Alignment:
Q  443 cttaagtgcaattccagttgtgattttacgcgttttggtcaaaaaatcaaaa 494  Q
    |||||||||| || || |||||||||||||||||| |||| |||||||||||    
T  47611116 cttaagtgcagtttcaattgtgattttacgcgtttcggtcgaaaaatcaaaa 47611065  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 22929019 - 22929053
Alignment:
Q  460 ttgtgattttacgcgttttggtcaaaaaatcaaaa 494  Q
    |||||||||||| ||||||||||||||||||||||    
T  22929019 ttgtgattttacacgttttggtcaaaaaatcaaaa 22929053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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