View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_20 (Length: 449)
Name: NF11557A_low_20
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 23 - 437
Target Start/End: Complemental strand, 39991295 - 39990887
Alignment:
| Q |
23 |
gtggaaaatgtgttcaatgaagatagaaatagaaagtataacaaagcaaacaactgcaacggcccaagtaggtgtttcagttaagcttcttccaacgctt |
122 |
Q |
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| T |
39991295 |
gtggaaaatgtgttcaatgaagatagaaatagaaagtataacaaagcaaacaactgcaacggcccaagtaggtgtttcagttaagcttcttccaacgctt |
39991196 |
T |
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| Q |
123 |
cctcctgccattgtaaattgcttataagttaattaagttgcaagcaacattaacagattgcatatatatacttatttttaggcatagatgtgaaggtatt |
222 |
Q |
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| T |
39991195 |
cctcctgccattgtaaattgcttcttagttaattaatttgcaagaaacattaacagattgcatatatatacttatttttaggcatagatgtgaagttatt |
39991096 |
T |
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| Q |
223 |
aatgatgagtagaggttgtgtagaggaatctgtgtttc----taatataatagtggatgtgaagttgatattaggacaaaaaaggggatttcattagnnn |
318 |
Q |
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| T |
39991095 |
aatgatgagta-----------gaggaatctgtgtttctaattaatataatagtggatgtgaagttgatattaggacaaaataggggatttcattagttt |
39991007 |
T |
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| Q |
319 |
nnnnnaatgtc-aaaatcaatgatattctcgttcacatatgtctgaatttttgtcttcttggttaatttaatttatctgtcttaatttggtgctgtaatt |
417 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39991006 |
tttttaatgtcaaaaatcaatgatattctcgttcacatatgtctgaatttttgtcttcttggttaatttaatttatctgtcttaatttggtgctgtaatt |
39990907 |
T |
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| Q |
418 |
tgtcttttccttttgatatt |
437 |
Q |
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| T |
39990906 |
tgtcttttccttttgatatt |
39990887 |
T |
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