View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_201 (Length: 267)
Name: NF11557A_low_201
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_201 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 8e-70; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 109 - 246
Target Start/End: Original strand, 37217616 - 37217753
Alignment:
| Q |
109 |
tttggtgtttatactatattctttaatgtaacagtaattttgtaacctatatctatatgtggttatgtccatatatataggtacacttaattggatattg |
208 |
Q |
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| T |
37217616 |
tttggtgtttatactatattctttaatgtaacagtaattttgtaacctatatctatatgtggttatgtccatatatataggtacacttgattggatattg |
37217715 |
T |
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| Q |
209 |
tgtcgagggatttctattccttgtgtatgaatacatgg |
246 |
Q |
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| T |
37217716 |
tgtcgagggatttctattccttgtgtatgaatacatgg |
37217753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 109 - 246
Target Start/End: Original strand, 37232263 - 37232396
Alignment:
| Q |
109 |
tttggtgtttatactatattctttaatgtaacagtaattttgtaacctatatctatatgtggttatgtccatatatataggtacacttaattggatattg |
208 |
Q |
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| T |
37232263 |
tttgttgtttatactatattctctaatgtaatagtaattttgtaacctatatctatctgttgttatgtcc----atataggtacacttgattggatattg |
37232358 |
T |
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| Q |
209 |
tgtcgagggatttctattccttgtgtatgaatacatgg |
246 |
Q |
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| T |
37232359 |
tgttgagggatttctatttcttgtgtatgaatacatgg |
37232396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 109 - 246
Target Start/End: Original strand, 37223319 - 37223452
Alignment:
| Q |
109 |
tttggtgtttatactatattctttaatgtaacagtaattttgtaacctatatctatatgtggttatgtccatatatataggtacacttaattggatattg |
208 |
Q |
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| T |
37223319 |
tttgctgtttatattatattctttaatgtatcagtaattttgtaacctatatctatctattgttatgttcatat----aggtacacttgattggatattg |
37223414 |
T |
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| Q |
209 |
tgtcgagggatttctattccttgtgtatgaatacatgg |
246 |
Q |
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| T |
37223415 |
tgttgagggatttctattccttgtgtatgaatacatgg |
37223452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 37385631 - 37385571
Alignment:
| Q |
184 |
tataggtacacttaattggatattgtgtcgagggatttctattccttgtgtatgaatacat |
244 |
Q |
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| T |
37385631 |
tataggtacacttgattggatattgtgttgagggatctctattccttgtttatgaatacat |
37385571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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