View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_211 (Length: 265)
Name: NF11557A_low_211
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_211 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 26017994 - 26017781
Alignment:
| Q |
14 |
gaacattgcaattaattgatgaagtcctataccttttcccataatccatctgaagctaagattaacaagtcatggtgaggttcaattctgagtactttgg |
113 |
Q |
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| T |
26017994 |
gaacattgcaattaattgatgaagtcctataccttttcccataatccatctgaagctaagattaaaaagtcatgatgaggttcaattctgagtactttgg |
26017895 |
T |
|
| Q |
114 |
tctcaggctctgctatcacccattgtttcatgtgtccatcaccaatgctccttgaaacagcaagagatccttggattctccaaacaccgcggcacatatc |
213 |
Q |
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| T |
26017894 |
tctcaggttctgctatcacatattgtttcatgtgtctatctccaatgctccttgaaacagcaagagatccttggattctccaaacaccgcggcacatatc |
26017795 |
T |
|
| Q |
214 |
atcatatcctccct |
227 |
Q |
| |
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|||||||||||| |
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| T |
26017794 |
tacatatcctccct |
26017781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 26003247 - 26003035
Alignment:
| Q |
15 |
aacattgcaattaattgatgaagtcctataccttttcccataatccatctgaagctaagattaacaagtcatggtgaggttcaattctgagtactttggt |
114 |
Q |
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||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26003247 |
aacatcgcaattaattggtcaagtcctataccttttcccataatccatctgaagctaagattaacaagtcatgatgaggttcaattctgagtactttggt |
26003148 |
T |
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| Q |
115 |
ctcaggctctgctatcacccattgtttcatgtgtccatcaccaatgctccttgaaacagcaagagatccttggattctccaaacaccgcggcacatatca |
214 |
Q |
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|||||| ||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26003147 |
ctcaggttctgctatcacatattgtttcatgtgtctatctccaatgctccttgaaacagcaagagatccttggattctccaaacaccgcggcacatatcg |
26003048 |
T |
|
| Q |
215 |
tcatatcctccct |
227 |
Q |
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|||||||||||| |
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| T |
26003047 |
acatatcctccct |
26003035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 43 - 204
Target Start/End: Complemental strand, 30374471 - 30374310
Alignment:
| Q |
43 |
taccttttcccataatccatctgaagctaagattaacaagtcatggtgaggttcaattctgagtactttggtctcaggctctgctatcacccattgtttc |
142 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||||| | |||||||||||| | ||||| ||||| ||||| ||| |||||||||||||| |
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| T |
30374471 |
taccttatcccataatccatctgaagctaatattaacaagtcatgttcaggttcaattctaataactttagtctcgggctccgctgtcacccattgtttc |
30374372 |
T |
|
| Q |
143 |
atgtgtccatcaccaatgctccttgaaacagcaagagatccttggattctccaaacaccgcg |
204 |
Q |
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| T |
30374371 |
aagtgtcggtctccaattcctcttgatacagcaagagatccttgaatcctccaaacaccgcg |
30374310 |
T |
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