View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11557A_low_214 (Length: 263)
Name: NF11557A_low_214
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_214 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 255
Target Start/End: Complemental strand, 45643255 - 45643012
Alignment:
| Q |
8 |
taactttattattgacagtgttcaactatgaagctgggtggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactggaaattcaat |
107 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
45643255 |
taactttattat-gacagtgttcaactatgtagctggg---cacacagtggatgaagttaaagaaagtgactataaatcatgcacaactggaaattcaat |
45643160 |
T |
|
| Q |
108 |
tagtactgacagcagtggtgccacaaccattcccctcaaagaagcgggaacacattacttcatatgtgctattcctggacattgcacatttggcatgaaa |
207 |
Q |
| |
|
|||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45643159 |
tagtacagacagtagcggtgccacaaccattcccctcaaagaagcgggaacacattacttcatatgtgctattcctggacattgcacatttggcatgaaa |
45643060 |
T |
|
| Q |
208 |
ctctttgttagtgttaagccttcttctgctgctccttctgcaacacca |
255 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
45643059 |
ctctttgttaaggttaagccttcttctgctgctccttctgcaacacca |
45643012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 45703063 - 45703250
Alignment:
| Q |
8 |
taactttattatt--gacagtgttcaactatgaagctgggtggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactggaaattca |
105 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45703063 |
taactttattattatgacagtgttcaactatgaagctgggtggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactagaaattca |
45703162 |
T |
|
| Q |
106 |
attagtactgacagcagtggtgccacaaccattcccctcaaagaagcgggaacacattacttcatatgtgctattcctggacattgca |
193 |
Q |
| |
|
|||||||| ||| | ||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||| |||||||| |
|
|
| T |
45703163 |
attagtacagacggtagtggtgccacaaccattcccctcaaaaaagcaggaactcattacttcatatgtgctgttcctgtacattgca |
45703250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 45650508 - 45650283
Alignment:
| Q |
20 |
tgacagtgttcaactatgaagctgggtggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactggaaattcaattagtactgacag |
119 |
Q |
| |
|
||||||| |||||||||| ||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45650508 |
tgacagtattcaactatggagctggg---cacacagtggatgaagttaaagaaagtgactataaatcatgcacaactggaaattcaattagtactgacag |
45650412 |
T |
|
| Q |
120 |
cagtggtgccacaaccattcccctcaaagaagcgggaacacattacttcatatgtgctattcctggacattgcacatttggcatgaaactctttgttagt |
219 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||| | ||||| |
|
|
| T |
45650411 |
cagtggtcccacaaccattcccctcaagaaagcaggaacacattacttcatatgtgctgttcctggacattgcacaggtggcatgaaactttctgttaaa |
45650312 |
T |
|
| Q |
220 |
gttaagccttcttctgctgctccttctgc |
248 |
Q |
| |
|
|||||| |||||||| |||| ||||||| |
|
|
| T |
45650311 |
gttaaggcttcttctagtgcttcttctgc |
45650283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 45886889 - 45887062
Alignment:
| Q |
20 |
tgacagtgttcaactatgaagctgggtggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactggaaattcaattagtactgacag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||| |||||||||||||||| ||| | |
|
|
| T |
45886889 |
tgacagtgttcaactatgaagctgggtggcacacagtggatgaagttaatgaaagtgactataattcatgcacaactagaaattcaattagtacagacgg |
45886988 |
T |
|
| Q |
120 |
cagtggtgccacaaccattcccctcaaagaagcgggaacacattacttcatatgtgctattcctggacattgca |
193 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||| |||||||| |
|
|
| T |
45886989 |
tagtggtgccacaaccattcccctcaaaaaagcaggaactcattacttcatatgtgctgttcctgtacattgca |
45887062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 134
Target Start/End: Complemental strand, 30054843 - 30054756
Alignment:
| Q |
47 |
ggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactggaaattcaattagtactgacagcagtggtgccacaac |
134 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||| ||||||||| ||| |||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
30054843 |
ggcacacagtggattaagttaaagaaagtgactataaatcatgcataaccagaaattcaattagtacagacagtagcggtgccacaac |
30054756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University