View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_232 (Length: 254)
Name: NF11557A_low_232
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_232 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 230
Target Start/End: Original strand, 7500586 - 7500802
Alignment:
| Q |
14 |
gagatgaaggaacggtaaccaccagggaaagtggtgataatgtggctaacggttggatgcagaaggcaaggccacatggaggtgcaaatgttccgccata |
113 |
Q |
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| T |
7500586 |
gagaagaaggaacggtaaccaccagggaaagtggtgataatgtggctaacggttggatgcagaaggcaaggccacatggaggtgcaaatgttccgccata |
7500685 |
T |
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| Q |
114 |
attcctcgttgttgcagatcaagtggcgaaggtcagaacatacacaggacaatgccattaaggctgccccatcgaggcgtggaaggatataggtctggat |
213 |
Q |
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| T |
7500686 |
attcctcgttgttgcagatcaagtggcgaaggtcggaacatacacaggacaatgccattaaggctgccccatcgaggcgtggaaggatataggtctggat |
7500785 |
T |
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| Q |
214 |
gatgtctggatctaacc |
230 |
Q |
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| T |
7500786 |
gatgtctggatctaacc |
7500802 |
T |
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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 7502019 - 7502118
Alignment:
| Q |
14 |
gagatgaaggaacggtaaccaccagggaaagtggtgataatgtggctaacggttggatgcagaaggcaaggccacatggaggtgcaaatgttccgccata |
113 |
Q |
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| T |
7502019 |
gagaagaatgaactgtaaccaccggggaaagtggagatgacatcgttaacgattggatccataagggaaggccactttgaggtgcaaatattccgccata |
7502118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 27253177 - 27253110
Alignment:
| Q |
95 |
gtgcaaatgttccgccataattcctcgttgttgcagatcaagtggcgaaggtcagaacatacacagga |
162 |
Q |
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| T |
27253177 |
gtgcatatgttccgccatagatcttcgttgttgcagatcatgtggcggagttctgaagatacacagga |
27253110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 254
Target Start/End: Original strand, 11732147 - 11732181
Alignment:
| Q |
220 |
tggatctaacccacatgccaaccgggatagataaa |
254 |
Q |
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| T |
11732147 |
tggatctaactcacatgccaaccgggatagataaa |
11732181 |
T |
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