View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11557A_low_235 (Length: 254)
Name: NF11557A_low_235
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_235 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 41311268 - 41311027
Alignment:
| Q |
1 |
agagttgggtcgttcttgaatggttcgattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41311268 |
agagttgggtcgttcttgaatggttctattcattggctggtttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacac |
41311169 |
T |
|
| Q |
101 |
tgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41311168 |
tgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatgga |
41311069 |
T |
|
| Q |
201 |
gatgcctacacttaagatatgggtgatgcaagaatacacaat |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41311068 |
gatgcctacacttaagatatgggtgatgcaagaatacgcaat |
41311027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 43164946 - 43164710
Alignment:
| Q |
1 |
agagttgggtcgttcttgaatggttcgattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacac |
100 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||| ||||| || || |||||||||| |||||||||||||||| |||||||||||||| |||| |
|
|
| T |
43164946 |
agagtcgggtcgttcttgaatggttctattcattggctggtttataattatgagactgaaatagatgttattattgcctatgatttaaaggaaaagacaa |
43164847 |
T |
|
| Q |
101 |
tgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatgga |
200 |
Q |
| |
|
||||||||| |||||| ||||||| |||||||||||||| ||| | | ||||||||||| ||||| || || ||||||| || |||||||||||||| |
|
|
| T |
43164846 |
tgtcagagattgctcttccagatgatttttatagtgatttttctcccaacctttatgatttgttggtacttcgcggacttatcagcgtatggaatatgga |
43164747 |
T |
|
| Q |
201 |
gatgcctacacttaagatatgggtgatgcaagaatac |
237 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
43164746 |
gatgtctacacttaagatatgggtaatgcaagaatac |
43164710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 30165659 - 30165883
Alignment:
| Q |
1 |
agagttgggtcgttcttgaatggttcgattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacac |
100 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30165659 |
agagttgggtcgttcttcaatggttctattcattggctggtttataattatcagactgaaatggatgttattattgcctttgatttaaaggaagcgacaa |
30165758 |
T |
|
| Q |
101 |
tgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatgga |
200 |
Q |
| |
|
|| |||||| ||||| ||| ||| || || | ||| |||||||||||||| |||||||| ||||||| |||||||||||| |||| |
|
|
| T |
30165759 |
tggcagagatagctcttccaaatgattgttctcgtg------------gaatttatgatttgttggtatttcatggacttatcagtgtatggaatgtgga |
30165846 |
T |
|
| Q |
201 |
gatgcctacacttaagatatgggtgatgcaagaatac |
237 |
Q |
| |
|
|| | ||||| |||||||||||||||||||||||||| |
|
|
| T |
30165847 |
gaggtctacagttaagatatgggtgatgcaagaatac |
30165883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 30125222 - 30124981
Alignment:
| Q |
1 |
agagttgggtcgttcttgaatggttcgattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacac |
100 |
Q |
| |
|
|||||||||| |||||||||||| | |||||||||||| || || || || |||| | | |||||||||| |||||||||||||||||||| |||| |
|
|
| T |
30125222 |
agagttgggttgttcttgaatgggactattcattggctggttcataatcatgagaccaacaaggatgttattgttgcctttgatttaaaggaagcgacaa |
30125123 |
T |
|
| Q |
101 |
tgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatgga |
200 |
Q |
| |
|
||||||| | ||||| ||| ||| |||||||| ||||||||| || | |||||||||| | |||||||| ||||||| ||| |||||| | | || |
|
|
| T |
30125122 |
tgtcagaaatagctcttccaaatgatttttataccgattactctcctgtagattatgatttgttagtatttggtggacttatcagtttatggattcttga |
30125023 |
T |
|
| Q |
201 |
gatgcctacacttaagatatgggtgatgcaagaatacacaat |
242 |
Q |
| |
|
|||| | || |||||||| |||||||||| |||||| |||| |
|
|
| T |
30125022 |
gatggatgcagttaagatacgggtgatgcatgaatacgcaat |
30124981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 28181076 - 28180965
Alignment:
| Q |
28 |
attcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatggtt |
127 |
Q |
| |
|
|||||||||||| ||||| || || |||| |||| | |||||||||||||||||||||||||||||||||| ||||||| | ||||| ||||||| || |
|
|
| T |
28181076 |
attcattggctggtttataattatgagaccaaaattggtgttattattgcctttgatttaaaggaaatgacaatgtcagatatagctcttccagatgatt |
28180977 |
T |
|
| Q |
128 |
tttatagtgatt |
139 |
Q |
| |
|
||||||| |||| |
|
|
| T |
28180976 |
tttatagggatt |
28180965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 30131176 - 30131068
Alignment:
| Q |
1 |
agagttgggtcgttcttgaatggttcgattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacac |
100 |
Q |
| |
|
||||| |||| |||||||||||| | |||||||||||| ||||| || || |||| || |||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
30131176 |
agagtcgggttgttcttgaatggggctattcattggctggtttataattatgagacaagaagggatgttattatagcctttaatttaaaggaaatgacaa |
30131077 |
T |
|
| Q |
101 |
tgtcagaga |
109 |
Q |
| |
|
||||||||| |
|
|
| T |
30131076 |
tgtcagaga |
30131068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 30120174 - 30120068
Alignment:
| Q |
3 |
agttgggtcgttcttgaatggttcgattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactg |
102 |
Q |
| |
|
|||||||| |||||||||||| | ||||||||| || || || || || |||| | ||| |||||||||||||||||||||||||||||| |||| | |
|
|
| T |
30120174 |
agttgggttgttcttgaatggggctattcattgggtggttcataatcatgagaccaacatgaatgttattattgcctttgatttaaaggaaacgacaata |
30120075 |
T |
|
| Q |
103 |
tcagaga |
109 |
Q |
| |
|
||||||| |
|
|
| T |
30120074 |
tcagaga |
30120068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 30130967 - 30130934
Alignment:
| Q |
207 |
tacacttaagatatgggtgatgcaagaatacaca |
240 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
30130967 |
tacagttaagatatgggtgatgcaagaatacaca |
30130934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 21426642 - 21426703
Alignment:
| Q |
63 |
ggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatg |
124 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||| ||||||||| ||||| ||||||| |
|
|
| T |
21426642 |
ggatgttattattgcccttgatttaaaggaaacaacaatgtcagagatagctcttccagatg |
21426703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University