View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_237 (Length: 253)
Name: NF11557A_low_237
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_237 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 5949220 - 5949434
Alignment:
| Q |
19 |
acagtaaaatgtgtgttagagagtgtttttcaaaatttctattatttataattaaatttttctctttgttggtctatgcagcatgttaaattaaagtata |
118 |
Q |
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| T |
5949220 |
acagtgaaatgtgtgttagagagtgtttttcaaaatttctattatttataattaaatttttgtctttgttggtctatgcagcatgttaaattaaagtata |
5949319 |
T |
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| Q |
119 |
taattcatgttggtgattagnnnnnnncaacatttgtggttttgatgcagtttccattactttctagaagtggactactaaagaaactaattgcagagtc |
218 |
Q |
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| T |
5949320 |
taattcatgttggtgattagtttttttcaacatttgtgattttgatgcagtttccattactttctagaagtggactactaaagaaactaattgcagagtc |
5949419 |
T |
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| Q |
219 |
cacaagtgaggatgg |
233 |
Q |
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| T |
5949420 |
cacaagtgaggatgg |
5949434 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 28321551 - 28321485
Alignment:
| Q |
167 |
agtttccattactttctagaagtggactactaaagaaactaattgcagagtccacaagtgaggatgg |
233 |
Q |
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|||||||||| || |||||||||||| ||||||||||||| |||| || ||||||| ||| ||||| |
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| T |
28321551 |
agtttccattgctctctagaagtggattactaaagaaactttttgctgactccacaaatgaagatgg |
28321485 |
T |
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