View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_240 (Length: 252)
Name: NF11557A_low_240
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_240 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 54 - 249
Target Start/End: Original strand, 32219089 - 32219284
Alignment:
| Q |
54 |
gcatgctgctgaggtgaaaagtttaactgacaaggtccaagagatggagactaaacatagcaaggatatggctgcaatggaagaaaaattgcaagttctt |
153 |
Q |
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| T |
32219089 |
gcatgctgctgaggtgaaaagttgaactgacaaggtccaagagatggagactaaacatagcaaagatatggttgcaatggaagaaaaattgcaagttctt |
32219188 |
T |
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| Q |
154 |
ctaagggtcatgctgaaccaaagcaacacaagcatagatatgggggatttaggagcttttttatcaacccaaaatgatgacaatattattcgacat |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
32219189 |
ctaagggtcatgctgaaccaaagcaacacaagcatagatatgggggatttaggagcttttttatcaacccaaaatgatgacaataatgttcgacat |
32219284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 54 - 249
Target Start/End: Original strand, 13778897 - 13779092
Alignment:
| Q |
54 |
gcatgctgctgaggtgaaaagtttaactgacaaggtccaagagatggagactaaacatagcaaggatatggctgcaatggaagaaaaattgcaagttctt |
153 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
13778897 |
gcatgctgctgaggtgaaaagtttaactgacaaggtccaagagatggagactatacatagaaaggatatggctgcaatggaagaaaaattgcaagttctt |
13778996 |
T |
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| Q |
154 |
ctaagggtcatgctgaaccaaagcaacacaagcatagatatgggggatttaggagcttttttatcaacccaaaatgatgacaatattattcgacat |
249 |
Q |
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| T |
13778997 |
ctaagagtcatgctgaaccaaagcaacacaggcatagatatgggggatttaggagcttttttatcaacccgaaatgatgacaataatgttcgacat |
13779092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 54 - 249
Target Start/End: Complemental strand, 11490368 - 11490173
Alignment:
| Q |
54 |
gcatgctgctgaggtgaaaagtttaactgacaaggtccaagagatggagactaaacatagcaaggatatggctgcaatggaagaaaaattgcaagttctt |
153 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11490368 |
gcatgctgctgaggtgaaaagtttaactgacaaggtccaagagatggagaccatacatagaaaggatatggctgcaatggaagaaaaattgcaagttctt |
11490269 |
T |
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| Q |
154 |
ctaagggtcatgctgaaccaaagcaacacaagcatagatatgggggatttaggagcttttttatcaacccaaaatgatgacaatattattcgacat |
249 |
Q |
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|| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||| |
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| T |
11490268 |
cttagagtcatgctgaaccaaagcaacacaggcatagatatgggggatttaggagcttttttatcaacccgaaatgatgacaataatgttcgacat |
11490173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 54 - 249
Target Start/End: Original strand, 19893788 - 19893983
Alignment:
| Q |
54 |
gcatgctgctgaggtgaaaagtttaactgacaaggtccaagagatggagactaaacatagcaaggatatggctgcaatggaagaaaaattgcaagttctt |
153 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
19893788 |
gcatgctgctgaggtgaaaagtttaactgacaaggtccaagagatggagactatacatagaaaggatatggctgcaatggaagaaaaattgcaagttctt |
19893887 |
T |
|
| Q |
154 |
ctaagggtcatgctgaaccaaagcaacacaagcatagatatgggggatttaggagcttttttatcaacccaaaatgatgacaatattattcgacat |
249 |
Q |
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||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||| | |||||||| |
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| T |
19893888 |
ctaagagtcatgctgaaccaaagcaacacaggcatagatatgggggatttaggagtttttttatcaacccgaaatgatgacaataatgttcgacat |
19893983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 147 - 249
Target Start/End: Original strand, 24245030 - 24245132
Alignment:
| Q |
147 |
agttcttctaagggtcatgctgaaccaaagcaacacaagcatagatatgggggatttaggagcttttttatcaacccaaaatgatgacaatattattcga |
246 |
Q |
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|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||| |
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| T |
24245030 |
agttcttctaagagtcatgctgaaccaaagcaacacaggcatagatatgggggatttaggagcttttttatcaacccgaaatgatgacaataatgttcga |
24245129 |
T |
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| Q |
247 |
cat |
249 |
Q |
| |
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||| |
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| T |
24245130 |
cat |
24245132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 234
Target Start/End: Original strand, 8729402 - 8729539
Alignment:
| Q |
97 |
atggagactaaacatagcaaggatatggctgcaatggaagaaaaattgcaagttcttctaagggtcatgctgaaccaaagcaacacaagcatagatatgg |
196 |
Q |
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||||||| |||||||| || || ||||| |||||||| | ||||||||||||||||| ||| ||||||||||||||||||| | | ||||| || |
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| T |
8729402 |
atggagaaaaaacatagtaaagagatggcagcaatggaggggaaattgcaagttcttcttaggttcatgctgaaccaaagcaattccgaccaagataggg |
8729501 |
T |
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| Q |
197 |
gggatttaggagcttttttatcaacccaaaatgatgac |
234 |
Q |
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||||||| | |||||| |||||||||| | |||||||| |
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| T |
8729502 |
gggatttggcagctttgttatcaaccccagatgatgac |
8729539 |
T |
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