View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_241 (Length: 252)
Name: NF11557A_low_241
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_241 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 30 - 240
Target Start/End: Original strand, 2263839 - 2264046
Alignment:
| Q |
30 |
catgattgcaagataaaaattcaaattttgaaggaatccacgtgagcacagttataagtggtattggaaaatattaagaggaccgcaaatggaagaannn |
129 |
Q |
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| T |
2263839 |
catgattgcaagataaaaattcaaattttgaatgaatccacgtgagcacagttataagtggtattgaaaaatattaggaggaccgcaaatggaagaa--- |
2263935 |
T |
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| Q |
130 |
nnnnagaaagactaaaagcaaaatttaaaatatttatagacaccaaatacttatttcgtccaatttgaagnnnnnnnctgtataaaatcaattttatata |
229 |
Q |
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| T |
2263936 |
tttgaaaaagactaaaagcaaaatttaaaatatttatagagaccaaatacttatttagtccaatttgaagaaaaaaaatgtataaaataaattttatata |
2264035 |
T |
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| Q |
230 |
ttgataatatt |
240 |
Q |
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||||||||||| |
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| T |
2264036 |
ttgataatatt |
2264046 |
T |
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