View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_244 (Length: 251)
Name: NF11557A_low_244
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_244 |
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Alignment Details
Target: chr8 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 35614742 - 35614513
Alignment:
| Q |
5 |
caggcatactaatatnnnnnnntctatcacatccatcaactgaatttcaaataaattcaaaaatagtaatatcatcaatgactgcaaagaagacacatca |
104 |
Q |
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| T |
35614742 |
caggcatactaatataaaaaaatctatcacatccatcaactgaatttcaaataaattcaaaaatactaatatcatcaatgactgcaaagaagacacacca |
35614643 |
T |
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| Q |
105 |
ttaatattttggtggtaaccaaattttaacataatnnnnnnntcaatataaaggattnnnnnnncccaatcgacgactcactgtttaatacataataata |
204 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| | | ||||| ||||||||||||||||||||||||| |
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| T |
35614642 |
ttaatattttggtggtaaccaaattttaacataataaaaaaatcaatataaagga-taaaaaaactcaatc----actcactgtttaatacataataata |
35614548 |
T |
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| Q |
205 |
acatttttccaccgattgctgcacaaagttatatt |
239 |
Q |
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| T |
35614547 |
acatttttccaccaattgctgcacaaagttatatt |
35614513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 27 - 239
Target Start/End: Complemental strand, 32262606 - 32262394
Alignment:
| Q |
27 |
tctatcacatccatcaactgaatttcaaataaattcaaaaatagtaatatcatcaatgactgcaaagaagacacatcattaatattttggtggtaaccaa |
126 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
32262606 |
tctatcgcatccatcaactgaatttcaaataaattcaaaaatactaatatcgtcaatgactacaaagaagacacaccattaatattttggtggtaaccaa |
32262507 |
T |
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| Q |
127 |
attttaacataatnnnnnnntcaatataaaggattnnnnnnncccaatcgacgactcactgtttaatacataataataacatttttccaccgattgctgc |
226 |
Q |
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||||||||||||| |||||||||||||| ||||||| | |||||| |||||||||||||||||||||||| ||||||| |||||||| |
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| T |
32262506 |
attttaacataataaaaaaatcaatataaaggataaaaaaaacccaatccatgactcattgtttaatacataataataacattgttccaccaattgctgc |
32262407 |
T |
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| Q |
227 |
acaaagttatatt |
239 |
Q |
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||||||||||||| |
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| T |
32262406 |
acaaagttatatt |
32262394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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