View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11557A_low_257 (Length: 250)
Name: NF11557A_low_257
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_257 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 12 - 245
Target Start/End: Complemental strand, 28390841 - 28390608
Alignment:
| Q |
12 |
atgaagtaggaacataccctctatctagttcttggttttcagaatcaagaacattgtcaattccattatacgatattccaaggatgtatccctctggtct |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28390841 |
atgaagtaggaacataccctctatctagttcttggttttcagaatcaagaacattgtcaattccattatacgatattccaaggatgtatccctctggtct |
28390742 |
T |
|
| Q |
112 |
tgccatagacacagaaataatgccattatcaacaaccaactgagaaaattataagtcaaagaataattgttaagctcaaaaaccatgcacattttatttg |
211 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
28390741 |
tgccatagacacagaaacaatgccattatcaacaaccaactgaaaaaattataagtaaaagaataattgttaaggtcaaaaaccaagcacattttatttg |
28390642 |
T |
|
| Q |
212 |
gaccaaacaaggaaatctacctaaccaatttttt |
245 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||| |
|
|
| T |
28390641 |
gaccaaacaaggaaatctaactaatcaatttttt |
28390608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 28382322 - 28382139
Alignment:
| Q |
18 |
taggaacataccctctatctagttcttggttttcagaatcaagaacattgtcaattccattatacgatattccaaggatgtatccctctggtcttgccat |
117 |
Q |
| |
|
||||||||||||||||||| ||| | ||||||||| ||||||| |||||||||||||||||||||||| ||| || || ||||| ||||||| || |
|
|
| T |
28382322 |
taggaacataccctctatcatcttcatcgttttcagattcaagaatgttgtcaattccattatacgatattgcaatgacgtgcccctcgggtcttgacaa |
28382223 |
T |
|
| Q |
118 |
agacacagaaataatgccattatcaacaaccaactgagaaaattataagtcaaagaataattgttaagctcaaaaaccatgcac |
201 |
Q |
| |
|
|| |||||||| ||||||||| |||| |||||||||| ||| | |||||||||||||| |||||||| |||||||||| |||| |
|
|
| T |
28382222 |
agtcacagaaacaatgccattgtcaataaccaactgaaaaatatgtaagtcaaagaatatttgttaaggtcaaaaaccaagcac |
28382139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 28413068 - 28413228
Alignment:
| Q |
23 |
acataccctctatctagttcttggttttcagaatcaagaacattgtcaattccattatacgatattccaaggatgtatccctctggtcttgccatagaca |
122 |
Q |
| |
|
|||||||||||| | |||||| || |||||| ||||||| |||||||||||||||||| ||||| |||| || ||||||||| || ||| || || | |
|
|
| T |
28413068 |
acataccctctagcatgttctttgtattcagattcaagaatattgtcaattccattatatgatatcccaatgaggtatccctccggctttgacaaagtga |
28413167 |
T |
|
| Q |
123 |
cagaaataatgccattatcaacaaccaactgagaaaattataagtcaaagaataattgttaa |
184 |
Q |
| |
|
|||||| ||||||||| |||||||| |||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
28413168 |
cagaaacaatgccattgtcaacaactaactgaaaaaatta-aagtcaaagaataattgttaa |
28413228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University