View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_261 (Length: 249)
Name: NF11557A_low_261
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_261 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 38265238 - 38265461
Alignment:
| Q |
20 |
aatcttttcatcaatcaaacacataacatgcccaattgaactcgacgattctattttgttgttgagcaatgctttgaagagaattagagaatgaaagaca |
119 |
Q |
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| T |
38265238 |
aatcttttcatcaatcaaacacataacatgcccaattgaactcgacgattctattttgttgttgagcaatgctttgaagagaattagagaatgaaagaca |
38265337 |
T |
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| Q |
120 |
ttgaagaaagaaaagcatctcctccttctc---ctcctctgtcgaagtcgaaatatgattattacggaatttgctttatcggaggtatgcttagttccgg |
216 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38265338 |
ttgaagaaagaaaagcatctcctccttctccttctcctctgtcgaagtcgaaatatgattattacggaatttgctttatcggaggtatgcttagttccgg |
38265437 |
T |
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| Q |
217 |
cgccacccatctcgctataacacc |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
38265438 |
cgccacccatctcgctataacacc |
38265461 |
T |
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