View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_264 (Length: 249)
Name: NF11557A_low_264
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_264 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 48021070 - 48020829
Alignment:
| Q |
8 |
agcagagagtagtttatcaaaggtcgcgagcttaaaaacaaaacaaaactatttatctacaagtatatgctacaatggctattaatatcaccacctaaga |
107 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48021070 |
agcaaagagtagtttatcaaaggtcgcgagcttaacaacaaaactaaactatttatctacaagtatatgctacaatggctattaatatcaccacctaaga |
48020971 |
T |
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| Q |
108 |
tttgcacaccaacttagattgtgcaatgacaagcagtgctgtgaaagagcagctctataacgctacagtttagtaggatttaaacaaaccaccactgttc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48020970 |
tttgcacaccaacttagattgtgcaatgacaagcagtgctgtgaaagagcagctctataacgctacagtttagtaggatttaaacaaaccactactgttc |
48020871 |
T |
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| Q |
208 |
tgcaatacaccatctagtacattgtagttatagaacagtagt |
249 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |
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| T |
48020870 |
tgcaatacaccatctagtacatcgtagttatagaacagtagt |
48020829 |
T |
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