View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_267 (Length: 249)
Name: NF11557A_low_267
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_267 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 27098957 - 27098719
Alignment:
| Q |
1 |
ggatcagaaggagaagatgatgtgatttgctgagaagttatgatggaaattgcagagaaaagaacgtgatgaagagattgaaaggttttgtgaaagtgtt |
100 |
Q |
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| T |
27098957 |
ggatcagaaggagaagatgatgggatttgctgagaagttaggatggaaattgcagagaaaagaacttgatgaagagattgaaaggttttgtgaaagtgtt |
27098858 |
T |
|
| Q |
101 |
ggtgtgagtagacaagtttttaaggtttggatgcataatcataagaattcttgtttctcaaattcttctgatccttctactggtaatgctaattcctctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27098857 |
ggtgtgagtagacaagtttttaaggtttggatgcataatcataagaattcttgtttctcaaattcttctgatccttctactggtaatgctaattcctctc |
27098758 |
T |
|
| Q |
201 |
ttactcagtagtgtgtgtgaagaattgcaattacgtcat |
239 |
Q |
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|||||||||||||||||||||||||| ||||||| |||| |
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| T |
27098757 |
ttactcagtagtgtgtgtgaagaatttcaattacttcat |
27098719 |
T |
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