View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_269 (Length: 249)
Name: NF11557A_low_269
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_269 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 36505952 - 36506193
Alignment:
| Q |
8 |
ccaacaatatgaagagtgcttccctcttcgtcatttttgtcatccaatcaacacggagtgggatcggatgcccaagcagatccgtttttctacaatatat |
107 |
Q |
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| T |
36505952 |
ccaacaaaatgaagagtgcttccctcttcgtcatttttgtcatgcaatcaacacggagtgggatcggatgcccaagcagatccgtttttctacaatctat |
36506051 |
T |
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| Q |
108 |
ttccaaacctctgtattcaaattgtaacttgccaacaaccttaccacgattgtcggcgtatactggtaaacaatccctgcagcagtaaagtaacagtgca |
207 |
Q |
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| T |
36506052 |
ttccaaacctccgtattcaaattgtaactcgccaacaaccttaccacgattgtcggcgtatactggtaaacaatccttgcagcagtaaagtaacaatgca |
36506151 |
T |
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| Q |
208 |
atatgttcaagtgcctcatcagaattttcctgtaacaaaaca |
249 |
Q |
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| T |
36506152 |
atatgttcaagtgcctcatcagaattttcctgtaaaaaaaca |
36506193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 128 - 249
Target Start/End: Complemental strand, 1548504 - 1548383
Alignment:
| Q |
128 |
attgtaacttgccaacaaccttaccacgattgtcggcgtatactggtaaacaatccctgcagcagtaaagtaacagtgcaatatgttcaagtgcctcatc |
227 |
Q |
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| T |
1548504 |
attgtaacttgccaacaaccttaccacgattgtcggcgtatactggtaaacaatccctgcagcagtaaagtaacagtgcaatatgttcaagtgcctcatc |
1548405 |
T |
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| Q |
228 |
agaattttcctgtaacaaaaca |
249 |
Q |
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| T |
1548404 |
agaattttcctgtaaaaaaaca |
1548383 |
T |
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