View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_27 (Length: 433)
Name: NF11557A_low_27
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 10 - 413
Target Start/End: Complemental strand, 17436423 - 17436020
Alignment:
| Q |
10 |
atgatattatacatcaacaagcattaagcatagaaataatacataattttctcaaggtagtgccaaagttatagtcaacctaatgacagaacgttcactt |
109 |
Q |
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| T |
17436423 |
atgatattatacatcaacaagcattaaccatataaataatacataattttctcaaggtagtgccaaagttatggtcaacctaatgacagaacgttcactt |
17436324 |
T |
|
| Q |
110 |
ggagcatcataagacatagtttcaaacacaacaaaccctcttgcatatcgaaaccttcctgttccagaaacaacagatagctctcttgaattctcacgtt |
209 |
Q |
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| T |
17436323 |
ggagcatcataagacatagtttcaaacacaacaaaccctcttgcatatcgaaaccttcctgttccagaaacaacagagagctctcttgaattctcacgtt |
17436224 |
T |
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| Q |
210 |
gacgactattaccttgaatctccaaagtgctaccactatattccccattgttgaacgcaagtgacaaaactatgttcacatttgcaccatctagagatgt |
309 |
Q |
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| T |
17436223 |
gacgactattaccttgtatctccaaagtgctaccactatattccccattgttgaacacaagtgacaaaactatgttcacatttgcaccatctagagatgt |
17436124 |
T |
|
| Q |
310 |
cactgtaattacaccttgtgcccttccaatttgacttgaaaatggactagggcttaacatgacggggtcatcaacgacaaatattgttccgaatgagtgg |
409 |
Q |
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| T |
17436123 |
cactgtaattacaccttgtgcccttccaatttgagttgaaaatggactagggcttaacatgacggggtcatcaacgacaaatattgttccgaatgagtgg |
17436024 |
T |
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| Q |
410 |
taag |
413 |
Q |
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|||| |
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| T |
17436023 |
taag |
17436020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 48 - 407
Target Start/End: Complemental strand, 17432515 - 17432153
Alignment:
| Q |
48 |
atacataattttctcaaggtagt---gccaaagttatagtcaacctaatgacagaacgttcacttggagcatcataagacatagtttcaaacacaacaaa |
144 |
Q |
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| T |
17432515 |
atacataattttctcaagatggtatagccaaagttacagtcaaacgaagaacagaatgattagttgaatcatcataagatacagtttcaaacacaacaaa |
17432416 |
T |
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| Q |
145 |
ccctcttgcatatcgaaaccttcctgttccagaaacaacagatagctctcttgaattctcacgttgacgactattaccttgaatctccaaagtgctacca |
244 |
Q |
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| T |
17432415 |
tcctcttgcatatcgaaaccttcctgttccggaaacaacagaaagctctcttgaattttcgcgttgtcgactagcaccttgaatctccaaagtgctacca |
17432316 |
T |
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| Q |
245 |
ctatattccccattgttgaacgcaagtgacaaaactatgttcacatttgcaccatctagagatgtcactgtaattacaccttgtgcccttccaatttgac |
344 |
Q |
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| T |
17432315 |
ctatattgcccattgttgaacacaagtgacaaaactatgctcacatttgaaccatcaagagatgttactgtaatcataccttgagcccttccgatttgag |
17432216 |
T |
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| Q |
345 |
ttgaaaatggactagggcttaacatgacggggtcatcaacgacaaatattgttccgaatgagt |
407 |
Q |
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||||| |||| ||||| ||||||| | |||||||| || |||||||||||||| ||||||| |
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| T |
17432215 |
ttgaacctggattagggtttaacataatagggtcatcgactacaaatattgttccaaatgagt |
17432153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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