View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_270 (Length: 249)
Name: NF11557A_low_270
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_270 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 12 - 216
Target Start/End: Original strand, 8692328 - 8692535
Alignment:
| Q |
12 |
aatattacttcacacaccatttcactcaattaacgcaaacaagcttcttatatttgggattatactcctaatactttcttggcatctcatcaatcttttc |
111 |
Q |
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| T |
8692328 |
aatattacttcacacaccatttcactcaattaacgcaaacaagcttcttatatttgggattttactcctaatactttcttggcatctcatcaatcttttc |
8692427 |
T |
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| Q |
112 |
tatgaatctaattatttctctattaaatctacttacatcaataatgcctgcttaattcataatcaa---aataatgggtgcttaattacccgaccagcta |
208 |
Q |
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| T |
8692428 |
tatgaatctaattatatctctattaaatctacttacatcaataatgcctgcttaattcataatcaaaataataatgggtgcttaattaaccgaccagcta |
8692527 |
T |
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| Q |
209 |
ttattaaa |
216 |
Q |
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|||||||| |
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| T |
8692528 |
ttattaaa |
8692535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 8674112 - 8674187
Alignment:
| Q |
29 |
catttcactcaattaacgcaa----acaagcttcttatatttgggattatactcctaatactttcttggcatctcat |
101 |
Q |
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| T |
8674112 |
catttcactcaattaaggcaagtaaacaagcttcttaaatt-gggattttactcctaataatttcttggtatctcat |
8674187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 249
Target Start/End: Original strand, 8692575 - 8692609
Alignment:
| Q |
215 |
aacatggaacaattacagcaaagaaaagaaacaaa |
249 |
Q |
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| T |
8692575 |
aacatgggacaattacagcaaagaaaagaaacaaa |
8692609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 8696973 - 8696924
Alignment:
| Q |
12 |
aatattacttcacacaccatttcactcaattaacgcaaacaagcttctta |
61 |
Q |
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| T |
8696973 |
aatattacttcacacaccacttcactcaaataagaaaaacaagcttctta |
8696924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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