View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_272 (Length: 248)
Name: NF11557A_low_272
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_272 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 25633603 - 25633365
Alignment:
| Q |
1 |
atcaattaattatatccagaatatattatttgatgataaagataaagaagtcggtaacatta-ttgttaatcattacttgcagcctaagcaactagatct |
99 |
Q |
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| T |
25633603 |
atcaattaattatatccagaatatattattagatgataaagataaagaagtcggtaacattagttgttaatcattacttgcagcctaagcaactagatct |
25633504 |
T |
|
| Q |
100 |
aagagtgcttagctacactatagcatatgatagcttaattaatgtacacaaacatatgtctatatatacttgctgtaacagat--acttcattaatgaga |
197 |
Q |
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| T |
25633503 |
aagagtacttagctacactatagtatatgatagcttaattaatgtacacaaacatatgtctatatatacttgctgtaacagatacacttcatcaatgaga |
25633404 |
T |
|
| Q |
198 |
ataatacttttccatacatttttctggtttcctaatatt |
236 |
Q |
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| T |
25633403 |
ataatacttctccattcatttttctggtttcctaatatt |
25633365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 177
Target Start/End: Complemental strand, 28669586 - 28669485
Alignment:
| Q |
72 |
attacttgcagcctaagcaactagatctaagagtgcttagctacactatagcatatgatagcttaattaatgtacacaaacata-tgtctatatatactt |
170 |
Q |
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||||||||||| |||||||||||| || ||||| |||||||||||||| || ||||||||||||| ||| |||| ||| ||||||||||||||| |
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| T |
28669586 |
attacttgcagtctaagcaactag-tcgcagagtaattagctacactataacacatgatagcttaat----gtagacaagcattctgtctatatatactt |
28669492 |
T |
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| Q |
171 |
gctgtaa |
177 |
Q |
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| T |
28669491 |
gctgtaa |
28669485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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