View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11557A_low_275 (Length: 248)

Name: NF11557A_low_275
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11557A_low_275
NF11557A_low_275
[»] chr1 (4 HSPs)
chr1 (1-242)||(48066590-48066831)
chr1 (9-242)||(48099543-48099776)
chr1 (1-242)||(48062501-48062742)
chr1 (7-240)||(48106142-48106375)
[»] scaffold1463 (1 HSPs)
scaffold1463 (1-154)||(849-1002)
[»] chr4 (1 HSPs)
chr4 (1-160)||(50231230-50231389)


Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 48066590 - 48066831
Alignment:
Q  1 atactgcagaggcattttcgccgagtttgtcctcaaaaaggcggttatggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttga 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48066590 atactgcagaggcattttcgccgagtttgtcctcaaaaaagcggttatggacattctcgttcacaacgtcccatgcaattaattgtccactatatcttga 48066689  T
Q  101 aacaacagatttcattctttttgcagccgcttctcgtaattcttcaggagatagggacttcacccattggggctgaaatctttcatcgttccacaaaatg 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  48066690 aaccacagatttcattctttttgcagccgcttctcgtaattcttcaggagatagggacttcacccattggggctgaaatctttcatcgtcccacaaaatg 48066789  T
Q  201 gcatgacctctgacagaaatgccattttctttggcaaatttc 242  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  48066790 gcatgacctctgacagaaatgccattttctttggcaaatttc 48066831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 9 - 242
Target Start/End: Original strand, 48099543 - 48099776
Alignment:
Q  9 gaggcattttcgccgagtttgtcctcaaaaaggcggttatggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttgaaacaacag 108  Q
    |||||||||||||||||||||| |||||||| | |||  ||||||||||| |||||||||||||||||||||| |||||| ||||| |||||||| ||||    
T  48099543 gaggcattttcgccgagtttgttctcaaaaaagtggtagtggacattctcattcacaacgtcccatgcaatcagttgtcctctataccttgaaaccacag 48099642  T
Q  109 atttcattctttttgcagccgcttctcgtaattcttcaggagatagggacttcacccattggggctgaaatctttcatcgttccacaaaatggcatgacc 208  Q
    || | ||||||||||||||||||| |||||||||||||||||||||| |||| |||||||  ||||||||  ||||||||| ||| |||| || ||||||    
T  48099643 atcttattctttttgcagccgcttttcgtaattcttcaggagataggaacttaacccatttaggctgaaaagtttcatcgtcccagaaaacggtatgacc 48099742  T
Q  209 tctgacagaaatgccattttctttggcaaatttc 242  Q
    ||||||||||||||||||||||||||| ||||||    
T  48099743 tctgacagaaatgccattttctttggcgaatttc 48099776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 48062501 - 48062742
Alignment:
Q  1 atactgcagaggcattttcgccgagtttgtcctcaaaaaggcggttatggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttga 100  Q
    |||||||||||||||||| |||||| ||||||||||||| | ||   ||||||||||| || || |||||||||||||||||||||||  |||| |||||    
T  48062501 atactgcagaggcatttttgccgaggttgtcctcaaaaaagtggaagtggacattctcatttaccacgtcccatgcaatcaattgtcctttataccttga 48062600  T
Q  101 aacaacagatttcattctttttgcagccgcttctcgtaattcttcaggagatagggacttcacccattggggctgaaatctttcatcgttccacaaaatg 200  Q
     || || |||||||||||||||||||| |||||||||||||| |||||||| ||||||    ||||||  || |||  |||||||  || ||||||||||    
T  48062601 gaccacggatttcattctttttgcagctgcttctcgtaattcatcaggagacagggacaaatcccattcaggttgacgtctttcactgtcccacaaaatg 48062700  T
Q  201 gcatgacctctgacagaaatgccattttctttggcaaatttc 242  Q
      ||||||||||||||| ||||||||||| || |||||||||    
T  48062701 ttatgacctctgacagatatgccattttccttagcaaatttc 48062742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 48106142 - 48106375
Alignment:
Q  7 cagaggcattttcgccgagtttgtcctcaaaaaggcggttatggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttgaaacaac 106  Q
    |||| |||||||| || |||||||||||| ||| | |   ||||||||| || ||||| || |||||||||||||||| |||  |||| |||  ||||||    
T  48106142 cagatgcattttcacctagtttgtcctcataaaagtgaaaatggacattttcattcaccacatcccatgcaatcaattctcctttataccttttaacaac 48106241  T
Q  107 agatttcattctttttgcagccgcttctcgtaattcttcaggagatagggacttcacccattggggctgaaatctttcatcgttccacaaaatggcatga 206  Q
    |||||  |||||||||   || ||||  || ||||| || || ||||   |||| |||||||  || ||| || ||||||||| ||| ||||||  ||||    
T  48106242 agattcgattctttttttcgcggctttgcgcaattcatcgggcgataaatacttaacccattcaggttgatatttttcatcgtcccagaaaatgttatga 48106341  T
Q  207 cctctgacagaaatgccattttctttggcaaatt 240  Q
    |||||||||||||| ||||| ||||| |||||||    
T  48106342 cctctgacagaaattccattatctttagcaaatt 48106375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1463 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold1463
Description:

Target: scaffold1463; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 1002 - 849
Alignment:
Q  1 atactgcagaggcattttcgccgagtttgtcctcaaaaaggcggttatggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttga 100  Q
    ||||||||||||||||||| ||||||||||||| |||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1002 atactgcagaggcattttctccgagtttgtcctaaaaaaatcggttgtggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttga 903  T
Q  101 aacaacagatttcattctttttgcagccgcttctcgtaattcttcaggagatag 154  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  902 aaccacagatttcattctttttgcagccgcttctcgtaattcttcaggagatag 849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 50231230 - 50231389
Alignment:
Q  1 atactgcagaggcattttcgccgagtttgtcctcaaaaaggcggttatggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttga 100  Q
    |||||||||||||||||| ||||||||||||||||||||  ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  50231230 atactgcagaggcatttttgccgagtttgtcctcaaaaaaccggttgtggacattctcgtttacaacgtcccatgcaatcaattgtccactatatcttga 50231329  T
Q  101 aacaacagatttcattctttttgcagccgcttctcgtaattcttcaggagatagggactt 160  Q
    ||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50231330 aaccaaaaatttcattctttttgcagccgcttctcgtaattcttcaggagatagggactt 50231389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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