View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_279 (Length: 247)
Name: NF11557A_low_279
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_279 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 31102306 - 31102084
Alignment:
| Q |
17 |
cttgtgagattcatgttaggcaaatcctaaattcgagtaatacacaaagagtgagattagagaaattcacctttgaaatggttttccttcctgttgatgg |
116 |
Q |
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| T |
31102306 |
cttgtgagattcatgttaggcaaatcctaaattcgagtaaaacacaaagagtgagattagagaaattcacctttgaaatcgttttccttcctgttgatgg |
31102207 |
T |
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| Q |
117 |
taaaaacttttctgccttccacgctgtttggaatgagcgttaacttaggagaaattattaggagacaaacaaagaatataaaacacttttgggtgaacat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31102206 |
taaaaacttttctgccttccacgctgtttggaatgagcgttaacttaggagaaattattaggagacaaacaaagaatataaaacacttttgggtgaacat |
31102107 |
T |
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| Q |
217 |
tttcatgataagtgacaacacca |
239 |
Q |
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||||||||||||||||||||||| |
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| T |
31102106 |
tttcatgataagtgacaacacca |
31102084 |
T |
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