View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11557A_low_280 (Length: 246)

Name: NF11557A_low_280
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11557A_low_280
NF11557A_low_280
[»] chr4 (19 HSPs)
chr4 (22-228)||(49376681-49376883)
chr4 (42-122)||(9469825-9469905)
chr4 (47-122)||(48731185-48731260)
chr4 (42-122)||(36543829-36543909)
chr4 (39-122)||(36156306-36156389)
chr4 (39-122)||(12673040-12673123)
chr4 (39-122)||(40797875-40797958)
chr4 (39-122)||(46944556-46944639)
chr4 (39-122)||(51995123-51995206)
chr4 (45-122)||(50146930-50147007)
chr4 (39-122)||(80542-80625)
chr4 (39-122)||(7505574-7505657)
chr4 (43-122)||(11055238-11055317)
chr4 (80-122)||(12789564-12789606)
chr4 (80-122)||(21441667-21441709)
chr4 (80-122)||(45674921-45674963)
chr4 (45-122)||(34980516-34980593)
chr4 (80-121)||(44791256-44791297)
chr4 (76-120)||(32397712-32397756)
[»] chr5 (19 HSPs)
chr5 (42-122)||(38522873-38522953)
chr5 (39-122)||(3801376-3801459)
chr5 (44-122)||(31620918-31620996)
chr5 (48-122)||(32156958-32157032)
chr5 (39-122)||(20190597-20190679)
chr5 (39-122)||(27450593-27450676)
chr5 (43-122)||(31021912-31021991)
chr5 (39-122)||(14500718-14500801)
chr5 (39-122)||(20189018-20189101)
chr5 (39-122)||(27196122-27196205)
chr5 (39-122)||(41783370-41783453)
chr5 (82-122)||(15933251-15933291)
chr5 (51-122)||(29328100-29328171)
chr5 (39-122)||(32945033-32945116)
chr5 (39-122)||(39407451-39407534)
chr5 (80-122)||(18880278-18880320)
chr5 (44-122)||(26299897-26299975)
chr5 (80-122)||(27906184-27906226)
chr5 (45-122)||(10327981-10328058)
[»] chr7 (17 HSPs)
chr7 (39-122)||(7447926-7448009)
chr7 (51-122)||(20401058-20401129)
chr7 (45-122)||(3942232-3942309)
chr7 (39-122)||(26719865-26719948)
chr7 (39-122)||(33898956-33899039)
chr7 (43-122)||(43052926-43053005)
chr7 (39-121)||(49034237-49034319)
chr7 (42-122)||(37401578-37401658)
chr7 (51-122)||(665859-665930)
chr7 (51-122)||(5776142-5776213)
chr7 (39-122)||(11595808-11595891)
chr7 (39-122)||(18250005-18250088)
chr7 (39-122)||(18740230-18740313)
chr7 (39-122)||(21760595-21760678)
chr7 (39-122)||(45055778-45055861)
chr7 (43-122)||(45176299-45176378)
chr7 (80-122)||(36927090-36927132)
[»] chr3 (12 HSPs)
chr3 (39-122)||(39469543-39469626)
chr3 (39-120)||(39135399-39135480)
chr3 (39-122)||(46293225-46293308)
chr3 (39-122)||(54393455-54393538)
chr3 (77-122)||(19560786-19560831)
chr3 (39-122)||(12710747-12710830)
chr3 (39-122)||(33438743-33438826)
chr3 (39-120)||(40943606-40943687)
chr3 (80-122)||(32689255-32689297)
chr3 (68-122)||(54432189-54432243)
chr3 (82-122)||(25253790-25253830)
chr3 (82-122)||(30743660-30743700)
[»] scaffold0022 (1 HSPs)
scaffold0022 (39-122)||(124493-124576)
[»] chr1 (25 HSPs)
chr1 (39-122)||(15014360-15014443)
chr1 (39-122)||(25124897-25124980)
chr1 (39-122)||(35810763-35810846)
chr1 (39-122)||(7596438-7596521)
chr1 (39-122)||(14578597-14578680)
chr1 (39-122)||(20347711-20347794)
chr1 (39-122)||(28006395-28006478)
chr1 (39-122)||(40159642-40159725)
chr1 (39-122)||(42916126-42916209)
chr1 (42-122)||(23916858-23916938)
chr1 (39-122)||(12224587-12224670)
chr1 (39-122)||(15257183-15257266)
chr1 (43-122)||(15306542-15306621)
chr1 (39-122)||(19508573-19508656)
chr1 (39-122)||(20349191-20349274)
chr1 (51-122)||(24469829-24469900)
chr1 (39-122)||(29677531-29677614)
chr1 (43-122)||(32179907-32179986)
chr1 (43-122)||(36419150-36419229)
chr1 (39-122)||(46264956-46265039)
chr1 (51-122)||(47602874-47602945)
chr1 (39-122)||(47983300-47983383)
chr1 (80-122)||(7702921-7702963)
chr1 (44-122)||(31816618-31816696)
chr1 (45-122)||(24575960-24576037)
[»] chr6 (6 HSPs)
chr6 (39-122)||(5640264-5640347)
chr6 (39-122)||(13312067-13312152)
chr6 (39-122)||(3081730-3081813)
chr6 (51-122)||(8200688-8200759)
chr6 (39-122)||(10961808-10961891)
chr6 (39-122)||(33110503-33110586)
[»] chr8 (6 HSPs)
chr8 (39-122)||(33279989-33280072)
chr8 (39-122)||(34516183-34516266)
chr8 (44-122)||(39478100-39478178)
chr8 (44-122)||(43384844-43384922)
chr8 (39-122)||(27189094-27189177)
chr8 (80-122)||(453569-453611)
[»] chr2 (8 HSPs)
chr2 (39-122)||(30713201-30713284)
chr2 (39-122)||(11027953-11028036)
chr2 (44-120)||(20203728-20203804)
chr2 (39-122)||(17616312-17616395)
chr2 (39-122)||(27464584-27464667)
chr2 (51-122)||(33831552-33831623)
chr2 (80-122)||(27634757-27634799)
chr2 (39-124)||(27902449-27902534)
[»] scaffold0260 (2 HSPs)
scaffold0260 (39-122)||(10034-10117)
scaffold0260 (39-122)||(11514-11597)
[»] scaffold0224 (1 HSPs)
scaffold0224 (39-122)||(7320-7403)
[»] scaffold0223 (1 HSPs)
scaffold0223 (45-122)||(14477-14554)
[»] scaffold0316 (1 HSPs)
scaffold0316 (80-122)||(19382-19424)
[»] scaffold0171 (1 HSPs)
scaffold0171 (48-122)||(21141-21215)


Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 49376883 - 49376681
Alignment:
Q  22 acatatcattaagagccttcggctcatttggttcatgga-tcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggtt 120  Q
    ||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||    
T  49376883 acatatcattaagagccttcggctcatttagttcatggaatcaagttcaatggaccaattgtcgagtcaaattacgaactatattcgatttggttcggtt 49376784  T
Q  121 caattcattatcagccctattattggcgcaagcatattttatttttcggttacaaagaagatcgaagcacaaggcataaagactttgttgagaataatat 220  Q
    |      || ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  49376783 cg-----ttgtcagccctactattggcgcaagcatattttatttttcgattacaaagaagatcgaagcgcaaggcataaagactttgttgagaataatat 49376689  T
Q  221 gtaaatat 228  Q
    ||||||||    
T  49376688 gtaaatat 49376681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 9469825 - 9469905
Alignment:
Q  42 ggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    ||||||||||||||||| | ||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9469825 ggctcatttggttcatgaaccaagttcaatagaccaattgtcgagtcgaattacgaactatattcgagttggttcggttca 9469905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 48731260 - 48731185
Alignment:
Q  47 atttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||| | ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  48731260 atttggttcatgaaccaaattcaatggaccaattgtcgagtcgaatttcgaactatattcgagttggttcggttca 48731185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 36543829 - 36543909
Alignment:
Q  42 ggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||| |||||||||||| | ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  36543829 ggcttatttggttcatgaaccaagttcaatggaccaattgtcgagtcgaattacgaactatattcgagttggttcagttca 36543909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 36156389 - 36156306
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||||||| | | ||| ||||| | | ||||| |||| |||||||||||||| || ||||||||||||||||||    
T  36156389 ttcggctcatttggttcaagaaccaagttcaacgaatcaattgtcgaatcgaattacgaactttaatcgagttggttcggttca 36156306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 12673123 - 12673040
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||| ||||||||||||||| | ||| ||||| |   |||||||||| ||||||  |||||||| |||||||||||||||||||    
T  12673123 ttcgactcatttggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaactattttcgagttggttcggttca 12673040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 40797875 - 40797958
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||| ||||||||||||||| | ||| ||||||| |||||||||||| || | |  |||||||| || ||||||||||||||||    
T  40797875 ttcgactcatttggttcatgaaccaagttcaatgaaccaattatcgaatcaagtatcgaactatttttgagttggttcggttca 40797958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 46944639 - 46944556
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||| ||||||||||||||| | ||| ||||| |  ||||||||||| ||||||  |||||||| || ||||||||||||||||    
T  46944639 ttcgactcatttggttcatgaaccaagttcaacgagccaattatcgaatcgaatctcgaactatttttgagttggttcggttca 46944556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 51995123 - 51995206
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||||||||| | ||| ||||| | |  ||||||||| |||| |  |||||||| |||||||||||||||||||    
T  51995123 ttcggctcatttggttcatgaaccaagttcaacgaattaattatcgaatcgagtctcgaactattttcgagttggttcggttca 51995206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 50147007 - 50146930
Alignment:
Q  45 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||| | ||| ||||| | | ||||| |||| |||||||||||||| || |||| |||||||||||||    
T  50147007 tcatttggttcatgaaccaagttcaacgaatcaattgtcgaatcgaattacgaactttaatcgaattggttcggttca 50146930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 80542 - 80625
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||| ||||||||||||||| | ||| ||||| | | |||||| ||| || |||| |||||||| |||||||||| ||||||||    
T  80542 ttcgactcatttggttcatgaaccaagttcaacgaaacaattaccgaatcaaatttcgaactattttcgagttggatcggttca 80625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 7505574 - 7505657
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||||||||| ||||| ||||| | || ||||| |||||| | ||  ||||| |||||||||||  ||||||||    
T  7505574 ttcggctcatttggttcatgaatcaagttcaacgaactaattaccgagtcaagttctgaactttattcgagttgtatcggttca 7505657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 11055317 - 11055238
Alignment:
Q  43 gctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||||| | ||| |||||||    ||||||||| |||| || ||||||||  ||||||||||||||||||    
T  11055317 gctcatttggttcatgaaccaagttcaatgagttaattatcgaatcgagttccgaactattgtcgagttggttcggttca 11055238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 12789606 - 12789564
Alignment:
Q  80 tatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||  ||||||||| ||||||||||||||||||    
T  12789606 tatcgagtcgaatgtcgaactataatcgagttggttcggttca 12789564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 21441667 - 21441709
Alignment:
Q  80 tatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||  ||||||||| ||||||||||||||||||    
T  21441667 tatcgagtcgaatgtcgaactataatcgagttggttcggttca 21441709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 45674921 - 45674963
Alignment:
Q  80 tatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||  ||||||||| ||||||||||||||||||    
T  45674921 tatcgagtcgaatgtcgaactataatcgagttggttcggttca 45674963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 34980593 - 34980516
Alignment:
Q  45 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    ||||||| |||||| ||||| ||||||| | |||||||||| |||| |  | |||||| |||||||||||| ||||||    
T  34980593 tcatttgattcatgaatcaagttcaatgaatcaattatcgaatcgagtctcaaactattttcgagttggtttggttca 34980516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 44791297 - 44791256
Alignment:
Q  80 tatcgagtcgaattacgaactatattcgagttggttcggttc 121  Q
    |||||||||||||  ||||||||| |||||||||||||||||    
T  44791297 tatcgagtcgaatgtcgaactataatcgagttggttcggttc 44791256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 32397756 - 32397712
Alignment:
Q  76 caattatcgagtcgaattacgaactatattcgagttggttcggtt 120  Q
    ||||| ||||||||||||||||||| || |||| |||||||||||    
T  32397756 caattgtcgagtcgaattacgaactttaatcgaattggttcggtt 32397712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 38522953 - 38522873
Alignment:
Q  42 ggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    ||||||||||||||||| | ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38522953 ggctcatttggttcatgaaccaagttcaatggaccaattatcgagtcaaattacgaactatattcgagttggttcggttca 38522873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 3801459 - 3801376
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||||||||| | ||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3801459 ttcggctcatttggttcatgaaccaagttcaatgaaccaattgtcgagtcgaattacgaactatattcgagttggttcggttca 3801376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 31620918 - 31620996
Alignment:
Q  44 ctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||| |||||||| | |||||||||||||| |||| |||||||||||| |||||||||||| |||||||||||||||    
T  31620918 ctcattaggttcatgaaccaaattcaatggactaattgtcgagtcgaatttcgaactatattcaagttggttcggttca 31620996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 32157032 - 32156958
Alignment:
Q  48 tttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    ||||| ||||| | ||| ||||||||||||||| || |||||||||||||||||||||||| |||||||||||||    
T  32157032 tttggctcatgaaacaagttcaatggaccaattgtcaagtcgaattacgaactatattcgaattggttcggttca 32156958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 20190679 - 20190597
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||||||||| | ||| ||| ||| | |||||||||| |||||||||||||| || | ||||||||||||||||    
T  20190679 ttcggctcatttggttcatgaaccaagttcgatgaatcaattatcgaatcgaattacgaact-taatagagttggttcggttca 20190597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 27450676 - 27450593
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||| |||||| |||||||| ||||||||||| | | |||||||||| ||||||  || ||||| |||||||||||||||||||    
T  27450676 ttcgactcattaggttcatgaatcaaattcaacgaatcaattatcgaatcgaatctcgcactattttcgagttggttcggttca 27450593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 31021912 - 31021991
Alignment:
Q  43 gctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||||| | |||| |||| |    |||||||||||||| || ||||||||||||||||||||||||||||    
T  31021912 gctcatttggttcatgaaccaaactcaacgagttaattatcgagtcgagttccgaactatattcgagttggttcggttca 31021991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 14500801 - 14500718
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||| ||||||||||| | ||| ||||| | || |||||||||||||| || |||||| |||||||||||  ||||||||    
T  14500801 ttcggctcgtttggttcatgaaccaagttcaacgaactaattatcgagtcgagttccgaactgtattcgagttgtatcggttca 14500718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 20189018 - 20189101
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||||||||| | ||| ||| | | | |||||||||| || ||||||||||| || |||||||| |||||||||    
T  20189018 ttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaatcaaattacgaactctaatcgagttgattcggttca 20189101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 27196122 - 27196205
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||| ||||||||||||||| | |||||| || | | |||||||||| |||| |  |||||||| |||||||||||||||||||    
T  27196122 ttcgactcatttggttcatgaaccaaatttaacgaatcaattatcgaatcgagtctcgaactattttcgagttggttcggttca 27196205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 41783370 - 41783453
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||||||||| | ||| ||||| | || ||||| |||||||| || |||||| |||||||||||  ||||||||    
T  41783370 ttcggctcatttggttcatgaaccaagttcaacgaactaattaccgagtcgagttccgaactttattcgagttgtatcggttca 41783453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 15933251 - 15933291
Alignment:
Q  82 tcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||| ||||||||| ||||||||||||||||||    
T  15933251 tcgagtcgaatttcgaactatactcgagttggttcggttca 15933291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 29328100 - 29328171
Alignment:
Q  51 ggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||| ||||| ||||| |||  || |||||||||||||  ||||||||| ||||||| ||||||||||    
T  29328100 ggttcatgaatcaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagtttgttcggttca 29328171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 32945116 - 32945033
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||| ||||||||||||||| | ||| || || | | |||||| ||| |||| || |||||||| |||||||||||||||||||    
T  32945116 ttcgactcatttggttcatgaaccaagtttaacgaatcaattaccgaatcgagtttcgaactattttcgagttggttcggttca 32945033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 39407451 - 39407534
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||| |||||| |||||||| ||||| ||||| | | |||||||||| ||||||  || ||||| || ||||||||||||||||    
T  39407451 ttcgactcattaggttcatgaatcaagttcaacgaatcaattatcgaatcgaatctcgcactatttttgagttggttcggttca 39407534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 18880278 - 18880320
Alignment:
Q  80 tatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||  ||||||||| ||||||||||||||||||    
T  18880278 tatcgagtcgaatgtcgaactataatcgagttggttcggttca 18880320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 26299897 - 26299975
Alignment:
Q  44 ctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||| |||||||| || || ||||| | | |||||||||| ||||||  || ||||| |||||||||||||||||||    
T  26299897 ctcattaggttcatgaatgaagttcaacgaatcaattatcgaatcgaatctcgcactattttcgagttggttcggttca 26299975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 27906184 - 27906226
Alignment:
Q  80 tatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||  ||||||||| ||||||||||||||||||    
T  27906184 tatcgagtcgaatgtcgaactataatcgagttggttcggttca 27906226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 10327981 - 10328058
Alignment:
Q  45 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||| ||||| ||||| | | |||||| ||| |||| ||  |||| || |||||||||||||||||||    
T  10327981 tcatttggttcatgaatcaagttcaacgaatcaattaccgaatcgagttttgaacaattttcgagttggttcggttca 10328058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 7447926 - 7448009
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||||||||| | ||| ||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  7447926 ttcggctcatttggttcatgaaccaagttcaatgaaccaattgtcgagtcgaattatgaactatattcgagttggttcggttca 7448009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 20401058 - 20401129
Alignment:
Q  51 ggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||| | |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||    
T  20401058 ggttcatgaaccaaattcaatggactaattaccgagtcgaatttcgaactatattcgagttggttcggttca 20401129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 3942232 - 3942309
Alignment:
Q  45 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||| | ||| ||||||| | ||| | |||| |||||||||||||| || ||||||||||||||||||    
T  3942232 tcatttggttcatgaaccaagttcaatgaatcaactgtcgaatcgaattacgaactttaatcgagttggttcggttca 3942309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 26719865 - 26719948
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||| ||||||||||||||| | ||| | ||||| |||||||||||| |||| |  |||||||| |||||||||||||| ||||    
T  26719865 ttcgactcatttggttcatgaaccaagtccaatgaaccaattatcgaatcgagtatcgaactattttcgagttggttcgattca 26719948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 33899039 - 33898956
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||| ||||||||||||||| | ||| | ||||| || |||| |||| ||||||  |||||||| |||||||||||||||||||    
T  33899039 ttcgactcatttggttcatgaaccaagtccaatgaactaattctcgaatcgaatatcgaactattttcgagttggttcggttca 33898956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 43052926 - 43053005
Alignment:
Q  43 gctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    ||||||| |||||||| | ||| ||||| |||  || |||||||||||||  ||||||||| ||||||||||||||||||    
T  43052926 gctcattaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttca 43053005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 49034319 - 49034237
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttc 121  Q
    |||| ||||||||||||||| | ||| ||||| | | |||||| ||| ||||||| |||||||| |||||||||| |||||||    
T  49034319 ttcgactcatttggttcatgaaccaagttcaacgaaacaattaccgaatcgaatttcgaactattttcgagttggatcggttc 49034237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 37401658 - 37401578
Alignment:
Q  42 ggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    ||||||||||||||||| ||||| |||||   | ||||| |||| |||||||||||||| || |||| |||||| ||||||    
T  37401658 ggctcatttggttcatgaatcaagttcaacaaatcaattttcgaatcgaattacgaactctaatcgaattggtttggttca 37401578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 665930 - 665859
Alignment:
Q  51 ggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||| | |||||| || |||  || |||||||||||||  ||||||||| ||||||||||||||||||    
T  665930 ggttcatgaaccaaatttaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttca 665859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 5776213 - 5776142
Alignment:
Q  51 ggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||| | ||| ||||| |||  || |||||||||||||  ||||||||| ||||||||||||||||||    
T  5776213 ggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttca 5776142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 11595891 - 11595808
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||| ||||||||||| | ||| ||||| | || ||||| |||||||| || |||||| |||||||||||  ||||||||    
T  11595891 ttcggctcgtttggttcatgaaccaagttcaacgaactaattaccgagtcgagttccgaactttattcgagttgtatcggttca 11595808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 18250088 - 18250005
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||| ||||||||||||||| | ||| ||||| | | |||||||||| |||| |   ||||||| |||||||||||||||||||    
T  18250088 ttcgactcatttggttcatgaaccaagttcaacgaatcaattatcgaatcgagtcttgaactattttcgagttggttcggttca 18250005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 18740313 - 18740230
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||| ||||||||||||||| | ||| || ||||   |||||||| | ||||||  |||||||| |||||||||||||||||||    
T  18740313 ttcgactcatttggttcatgaaccaagtttaatgagtcaattatcaaatcgaatctcgaactattttcgagttggttcggttca 18740230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 21760678 - 21760595
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||| |||||||||||| || |  || ||||| | | |||||||||| |||| || |||||||| |||||||||||||||||||    
T  21760678 ttcgactcatttggttcgtgaacaaagttcaacgaatcaattatcgaatcgagtttcgaactattttcgagttggttcggttca 21760595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 45055778 - 45055861
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||| ||||||||||| | ||| ||||| | || ||||| |||||||| || |||||| |||||||||||  ||||||||    
T  45055778 ttcggctcgtttggttcatgaaccaagttcaacgaactaattaccgagtcgagttccgaactttattcgagttgtatcggttca 45055861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 45176299 - 45176378
Alignment:
Q  43 gctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||| ||||||||||| | ||| ||||| |||  ||||||||||||||||  | ||||||| ||||||| ||||||||||    
T  45176299 gctcgtttggttcatgaaccaagttcaacggattaattatcgagtcgaatgtcaaactataatcgagtttgttcggttca 45176378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 36927090 - 36927132
Alignment:
Q  80 tatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||  ||||||||| ||||||||||||||||||    
T  36927090 tatcgagtcgaatgtcgaactataatcgagttggttcggttca 36927132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 39469626 - 39469543
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    ||||||||||||| |||||| | ||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  39469626 ttcggctcatttgattcatgaaccaagttcaatggaccaattatcgaatcgaattacgaactatattcgagttggttcagttca 39469543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 39135399 - 39135480
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggtt 120  Q
    |||||||||||||||||||| | ||| ||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||    
T  39135399 ttcggctcatttggttcatgaaccaagttcaatgaaccaattgtcgagtcgaattatgaactatattcgagttggttcggtt 39135480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 46293308 - 46293225
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||||||||| | |||||||||| |||||||| || |||||||||  ||||||||||||||||| |||||||||    
T  46293308 ttcggctcatttggttcatgaaccaaattcaattgaccaattgtcaagtcgaattttgaactatattcgagttgattcggttca 46293225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 54393538 - 54393455
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||||| ||| | ||| ||||| | | ||||| |||| |||||||||||||| || ||||||||||||||||||    
T  54393538 ttcggctcatttggtttatgaaccaagttcaacgaatcaattgtcgaatcgaattacgaactttaatcgagttggttcggttca 54393455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 19560831 - 19560786
Alignment:
Q  77 aattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||    
T  19560831 aattgtcgagtcgaattccgaactatattcgagttggttcggttca 19560786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 12710747 - 12710830
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||| ||||||||||||||| | ||| ||||| |   |||||||||| ||||||  |||||||| |||||||||||||||||||    
T  12710747 ttcgactcatttggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaactattttcgagttggttcggttca 12710830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 33438826 - 33438743
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||| ||||||||||||||| | ||| ||||| | | ||||| |||| ||||||||| |||| || ||||||||||||||||||    
T  33438826 ttcgactcatttggttcatgaaccaagttcaacgaatcaattgtcgaatcgaattacaaactttaatcgagttggttcggttca 33438743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 40943606 - 40943687
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggtt 120  Q
    |||| ||||||||||||||| | ||| | ||||| |||||||||| | |||| |  |||||||| |||||||||||||||||    
T  40943606 ttcgactcatttggttcatgaaccaagtccaatgaaccaattatcaaatcgagtatcgaactattttcgagttggttcggtt 40943687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 32689255 - 32689297
Alignment:
Q  80 tatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||  ||||||||| ||||||||||||||||||    
T  32689255 tatcgagtcgaatgtcgaactataatcgagttggttcggttca 32689297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 54432243 - 54432189
Alignment:
Q  68 caatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    ||||| |||||||||||| |||| |  |||||||| |||||||||||||||||||    
T  54432243 caatgaaccaattatcgaatcgagtatcgaactattttcgagttggttcggttca 54432189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 25253790 - 25253830
Alignment:
Q  82 tcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    ||||||||| || | ||||||||||||||||||||||||||    
T  25253790 tcgagtcgagttccaaactatattcgagttggttcggttca 25253830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 30743660 - 30743700
Alignment:
Q  82 tcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||  | ||||||||||||||||||||||||||||    
T  30743660 tcgagtcgagctccgaactatattcgagttggttcggttca 30743700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 124576 - 124493
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||| ||||||||||||||| | ||| ||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||    
T  124576 ttcgactcatttggttcatgaaccaagttcaatggaccaattgtcgagtcaaatttcgaactatattcgagttggttcggttca 124493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 15014360 - 15014443
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||||||||| ||||| ||| | | | |||||||||| |||||||||||||| || ||||||||||||||||||    
T  15014360 ttcggctcatttggttcatgaatcaagttcgacgaatcaattatcgaatcgaattacgaactctaatcgagttggttcggttca 15014443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 25124980 - 25124897
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||||||||| | ||| ||||| | | |||||||| | |||||||||||||| || ||||||||||||||||||    
T  25124980 ttcggctcatttggttcatgaaccaagttcaacgaatcaattatcaaatcgaattacgaactttaatcgagttggttcggttca 25124897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 35810763 - 35810846
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||||||||| | ||| ||||| | | ||||| |||| |||||||||||||| || ||||||||||||||||||    
T  35810763 ttcggctcatttggttcatgaaccaagttcaacgaatcaattgtcgaatcgaattacgaactttaatcgagttggttcggttca 35810846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 7596438 - 7596521
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||||||||  | ||| ||| | | | |||||||||| || ||||||||||| || ||||||||||||||||||    
T  7596438 ttcggctcatttggttcataaaccaagttcgacgaatcaattatcgaatcaaattacgaactctaatcgagttggttcggttca 7596521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 14578680 - 14578597
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||||||||| | ||| |||||   | ||||| || | |||||||||||||| || ||||||||||||||||||    
T  14578680 ttcggctcatttggttcatgaaccaagttcaacaaatcaattgtctaatcgaattacgaactctaatcgagttggttcggttca 14578597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 20347711 - 20347794
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    ||||||||||||||| |||| ||||||||||| | |  |||| ||||||| ||||   |||||||||||||||| |||||||||    
T  20347711 ttcggctcatttggtacatgaatcaaattcaacgaattaattgtcgagtcaaattttaaactatattcgagttgattcggttca 20347794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 28006395 - 28006478
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||| ||||||||||||||| | ||| ||||| |   |||||||||| ||||||  |||||||| |||||||||||||||||||    
T  28006395 ttcgactcatttggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaactattttcgagttggttcggttca 28006478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 40159725 - 40159642
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||| |||||||| |||||| | ||| | ||||| |||||||||||| ||||||  | |||||| |||||||||||||||||||    
T  40159725 ttcgactcatttgattcatgaaccaagtccaatgaaccaattatcgaatcgaatatcaaactattttcgagttggttcggttca 40159642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 42916209 - 42916126
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||||||||| | ||| ||| | | | |||||||||| |||||||||||||  || |||| |||||||||||||    
T  42916209 ttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaatcgaattacgaacactaatcgaattggttcggttca 42916126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 23916858 - 23916938
Alignment:
Q  42 ggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    ||||||||||||| ||| | ||| ||  ||| | |||||||||| |||||||||||||| || ||||||||||| ||||||    
T  23916858 ggctcatttggttaatgaaccaagtttgatgaatcaattatcgaatcgaattacgaactttaatcgagttggtttggttca 23916938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 12224670 - 12224587
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||||||||| | ||| ||||| |    |||| |||| ||||||| ||||||||  ||||||||||||||||||    
T  12224670 ttcggctcatttggttcatgaaccaagttcaacgagttaattgtcgaatcgaattccgaactattgtcgagttggttcggttca 12224587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 15257266 - 15257183
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||| ||||||||||||||| | ||| | ||||| |||||||||||| |||| |  | |||||| || ||||||||||||||||    
T  15257266 ttcgactcatttggttcatgaaccaagtccaatgaaccaattatcgaatcgagtatcaaactatttttgagttggttcggttca 15257183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 15306542 - 15306621
Alignment:
Q  43 gctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||||| | ||| ||||||| |  ||||||||| |||| || ||||||||  || |||||||||||||||    
T  15306542 gctcatttggttcatgaaccaagttcaatgaattaattatcgaatcgagttccgaactattgtcaagttggttcggttca 15306621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 19508573 - 19508656
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||| ||||||||||| | ||| ||||| | || ||||| |||||||| || |||||| |||||||||||  ||||||||    
T  19508573 ttcggctcgtttggttcatgaaccaagttcaacgaactaattaccgagtcgagttccgaactttattcgagttgtatcggttca 19508656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 20349191 - 20349274
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||||  ||| ||||| ||||| | |  |||||||||||| ||||   |||||| |||||||||||||||||||    
T  20349191 ttcggctcatttggtatatgaatcaagttcaacgaattaattatcgagtcaaattttaaactatgttcgagttggttcggttca 20349274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 24469900 - 24469829
Alignment:
Q  51 ggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||| | ||| ||||| |||  || |||||||||||||  ||||||||| ||||||||||||||||||    
T  24469900 ggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttca 24469829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 29677614 - 29677531
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||| |||||||||||| || | ||| ||||| | |||||||||| | |||| |  |||||||| |||||||||||||||||||    
T  29677614 ttcgactcatttggttcgtgaaccaagttcaacgaaccaattatcaaatcgagtatcgaactattttcgagttggttcggttca 29677531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 32179907 - 32179986
Alignment:
Q  43 gctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    ||||||| |||| ||| | ||| ||||| |||  || |||||||||||||  ||||||||| ||||||||||||||||||    
T  32179907 gctcattaggtttatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttca 32179986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 36419150 - 36419229
Alignment:
Q  43 gctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    ||||||| |||||||| | ||| ||| | |||  || |||||||||||||  ||||||||| ||||||||||||||||||    
T  36419150 gctcattaggttcatgaaccaagttcgacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttca 36419229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 46265039 - 46264956
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||| ||||||| | ||| ||| | | | |||||||||| |||||||||||||  || |||| |||||||||||||    
T  46265039 ttcggctcatttagttcatgaaccaagttcgacgaatcaattatcgaatcgaattacgaacactaatcgaattggttcggttca 46264956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 47602945 - 47602874
Alignment:
Q  51 ggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||| | ||| ||||| |||  || |||||||||||||  ||||||||| ||||||||||||||||||    
T  47602945 ggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttca 47602874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 47983300 - 47983383
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||| |||||||||||| || | ||| |||||   | |||||||||| ||||||  |||||||| |||||||||||||||||||    
T  47983300 ttcgactcatttggttcgtgaaccaagttcaacaaatcaattatcgaatcgaatctcgaactattttcgagttggttcggttca 47983383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 7702921 - 7702963
Alignment:
Q  80 tatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||  ||||||||| ||||||||||||||||||    
T  7702921 tatcgagtcgaatgtcgaactataatcgagttggttcggttca 7702963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 31816618 - 31816696
Alignment:
Q  44 ctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    ||||||||||||||| | ||| ||||| | | |||||| ||| | || || |||||||| |||||||||||||||||||    
T  31816618 ctcatttggttcatgaaccaagttcaacgaatcaattaccgaattgagtttcgaactattttcgagttggttcggttca 31816696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 24575960 - 24576037
Alignment:
Q  45 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||| | ||| ||||| |   |||||||||| || |||  |||||||| |||||||||||||||||||    
T  24575960 tcatttggttcatgaaccaagttcaacgagtcaattatcgaatcaaatctcgaactattttcgagttggttcggttca 24576037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 5640347 - 5640264
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||||||||| | ||| ||| | | | |||||||||| |||||||||||||| || ||||||||||||||||||    
T  5640347 ttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaatcgaattacgaactctaatcgagttggttcggttca 5640264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 13312067 - 13312152
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcga--attacgaactatattcgagttggttcggttca 122  Q
    |||| ||||||||||||||| | ||| | ||||| |||||||||||| ||||  ||  |||||||| |||||||||||||||||||    
T  13312067 ttcgactcatttggttcatgaaccaagtccaatgaaccaattatcgaatcgagtatatcgaactattttcgagttggttcggttca 13312152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 3081813 - 3081730
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||| |||||||||||| || | ||| ||||| | |||||||||||| |||| |  |||||||| |||||| ||||||||||||    
T  3081813 ttcgactcatttggttcgtgaaccaagttcaacgaaccaattatcgaatcgagtatcgaactattttcgagctggttcggttca 3081730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 8200688 - 8200759
Alignment:
Q  51 ggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||| ||||| ||||| |||  || |||||||||||||  ||||||||| ||||||||||| ||||||    
T  8200688 ggttcatgaatcaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggtttggttca 8200759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 10961891 - 10961808
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||| ||||||||||||||| | ||| ||||| | | ||||| |||| || |||||| |||| || ||||||||||||||||||    
T  10961891 ttcgactcatttggttcatgaaccaagttcaacgaatcaattgtcgaatcaaattacaaactttaatcgagttggttcggttca 10961808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 33110503 - 33110586
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||| ||||||||||| | ||| ||||| | || ||||| |||||||| || |||||| |||||||||||  ||||||||    
T  33110503 ttcggctcgtttggttcatgaaccaagttcaacgaactaattaccgagtcgagttccgaactttattcgagttgtatcggttca 33110586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 33280072 - 33279989
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||||||||| | ||| ||| | | | |||||||||| || ||||||||||| || ||||||||||||||||||    
T  33280072 ttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaatcaaattacgaactttaatcgagttggttcggttca 33279989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 34516183 - 34516266
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||||| ||| ||||| ||||||| | ||||| |||| | |||||||||||| || | ||||||||||||||||    
T  34516183 ttcggctcatttggttgatgaatcaagttcaatgaatcaattgtcgaattgaattacgaactttaattgagttggttcggttca 34516266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 39478100 - 39478178
Alignment:
Q  44 ctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    ||||||||||||||| | ||| | ||||| |||||||||||| |||| |  |||||||| |||||||||||||||||||    
T  39478100 ctcatttggttcatgaaccaagtccaatgaaccaattatcgaatcgagtatcgaactattttcgagttggttcggttca 39478178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 43384844 - 43384922
Alignment:
Q  44 ctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    ||||||||||||||| | ||| ||||| | |  ||||||||| ||||||  |||||||| |||||||||||||||||||    
T  43384844 ctcatttggttcatgaaccaacttcaacgaattaattatcgaatcgaatctcgaactattttcgagttggttcggttca 43384922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 27189177 - 27189094
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||| ||||||||||||||| | ||| ||| | | | |||||||||| || ||||||||||| || |||||||| |||||||||    
T  27189177 ttcgactcatttggttcatgaaccaagttcgacgaatcaattatcgaatctaattacgaactctaatcgagttgattcggttca 27189094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 453569 - 453611
Alignment:
Q  80 tatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||  ||||||||| ||||||||||||||||||    
T  453569 tatcgagtcgaatgtcgaactataatcgagttggttcggttca 453611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 30713201 - 30713284
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||||||||| | ||| ||| | | | |||||||||| |||||||||||||  || ||||||||||||||||||    
T  30713201 ttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaatcgaattacgaacactaatcgagttggttcggttca 30713284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 11027953 - 11028036
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||||||||| | ||| ||| | | | |||||||||| | |||||||||||| || | ||||||||||||||||    
T  11027953 ttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaattgaattacgaactctaattgagttggttcggttca 11028036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 20203804 - 20203728
Alignment:
Q  44 ctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggtt 120  Q
    ||||||||||||||| | ||| ||||| | | ||||| | || |||||||||||||| || ||||||||||||||||    
T  20203804 ctcatttggttcatgaaccaagttcaacgaatcaattgttgaatcgaattacgaactttaatcgagttggttcggtt 20203728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 17616312 - 17616395
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||||||||| ||||||||||| |    |||| |||| |||| || | |||||| |||||||||||||| ||||    
T  17616312 ttcggctcatttggttcatgtatcaaattcaacgagataattgtcgaatcgagtttctaactattttcgagttggttcgattca 17616395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 27464667 - 27464584
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||| ||||||||||||||| | |||||||||   | |||||||||| || | |  |||||||| |||||||||||||||||||    
T  27464667 ttcgactcatttggttcatgaaccaaattcaacaaatcaattatcgaatcaagtctcgaactattttcgagttggttcggttca 27464584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 33831552 - 33831623
Alignment:
Q  51 ggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||| | ||||||||| |||  |  |||||||||||||  ||||||||| ||||||||||||||||||    
T  33831552 ggttcatgaaccaaattcaacggattagatatcgagtcgaatgtcgaactataatcgagttggttcggttca 33831623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 27634757 - 27634799
Alignment:
Q  80 tatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||  ||||||||| ||||||||||||||||||    
T  27634757 tatcgagtcgaatgtcgaactataatcgagttggttcggttca 27634799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 124
Target Start/End: Complemental strand, 27902534 - 27902449
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttcaat 124  Q
    ||||| |||||| ||||||| | ||| ||| | | | ||||| |||| |||| ||||||||| || ||||||||||||||||||||    
T  27902534 ttcggttcattttgttcatgaaccaagttcgacgaatcaattgtcgaatcgatttacgaactttaatcgagttggttcggttcaat 27902449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 10034 - 10117
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    ||||||||||||||| |||| ||||||||||| | |  |||| ||||||| ||||   |||||||||||||||| |||||||||    
T  10034 ttcggctcatttggtacatgaatcaaattcaacgaattaattgtcgagtcaaattttaaactatattcgagttgattcggttca 10117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 11514 - 11597
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||||  ||| ||||| ||||| | |  |||||||||||| ||||   |||||| |||||||||||||||||||    
T  11514 ttcggctcatttggtatatgaatcaagttcaacgaattaattatcgagtcaaattttaaactatgttcgagttggttcggttca 11597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 7403 - 7320
Alignment:
Q  39 ttcggctcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||||||||| | ||| ||| | | | |||||||||| |||||||||||||  || |||| |||||||||||||    
T  7403 ttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaatcgaattacgaacactaatcgaattggttcggttca 7320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 14477 - 14554
Alignment:
Q  45 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||| | ||| ||||||| | |||||| ||| |||| || |||||||| |||| ||||||||||||||    
T  14477 tcatttggttcatgaaccaagttcaatgaatcaattaccgaatcgagtttcgaactattttcgggttggttcggttca 14554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 19382 - 19424
Alignment:
Q  80 tatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    |||||||||||||  ||||||||| ||||||||||||||||||    
T  19382 tatcgagtcgaatgtcgaactataatcgagttggttcggttca 19424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 21141 - 21215
Alignment:
Q  48 tttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 122  Q
    ||||||||||| | ||| ||||| | | |||||||||| |||| |  |||||||| |||||||||||||||||||    
T  21141 tttggttcatgaaccaagttcaacgaatcaattatcgaatcgagtctcgaactattttcgagttggttcggttca 21215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University