View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11557A_low_282 (Length: 246)

Name: NF11557A_low_282
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11557A_low_282
NF11557A_low_282
[»] chr2 (3 HSPs)
chr2 (1-225)||(32212593-32212816)
chr2 (6-48)||(18962127-18962169)
chr2 (8-48)||(5045248-5045288)
[»] chr4 (3 HSPs)
chr4 (8-51)||(21193934-21193977)
chr4 (6-37)||(30770833-30770864)
chr4 (8-48)||(8422928-8422968)
[»] chr8 (2 HSPs)
chr8 (6-48)||(4558737-4558779)
chr8 (8-37)||(31315544-31315573)
[»] chr6 (2 HSPs)
chr6 (2-48)||(10616792-10616838)
chr6 (8-48)||(2514641-2514681)
[»] chr1 (3 HSPs)
chr1 (6-48)||(36070189-36070231)
chr1 (7-48)||(15581055-15581096)
chr1 (8-48)||(17420142-17420182)
[»] chr7 (2 HSPs)
chr7 (8-56)||(3501057-3501105)
chr7 (8-48)||(48157211-48157251)
[»] chr5 (2 HSPs)
chr5 (8-48)||(11054125-11054165)
chr5 (8-48)||(38829726-38829766)
[»] chr3 (3 HSPs)
chr3 (8-48)||(35394792-35394832)
chr3 (8-36)||(48397597-48397625)
chr3 (1-37)||(49465747-49465783)


Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 32212816 - 32212593
Alignment:
Q  1 aaaaataactttattttatcttttattataaaaataggtcatacataatcattatgctatgagcactaaataaaattggtgcaggaggttcacttcattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32212816 aaaaataactttattttatcttttattataaaaataggtcatacataatcattatgctatgagcactaaataaaattggtgcaggaggttcacttcattt 32212717  T
Q  101 tttgctcccacatatatcatgtcatataaacataattgtacttggcaccaaaaagaagcaattacagttaatgactgctatttgaaatcatggaacgaga 200  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||    
T  32212716 tttgctcctacatatatcatgtcatataaacataattgtactt-gcaccaaaaagaagcagttacagttaatgactgcaatttgaaatcatggaactaga 32212618  T
Q  201 gcatcaaattgaggaagctgcttta 225  Q
    |||||||||||||||||||||||||    
T  32212617 gcatcaaattgaggaagctgcttta 32212593  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 18962127 - 18962169
Alignment:
Q  6 taactttattttatcttttattataaaaataggtcatacataa 48  Q
    ||||||||||||||||||| |||||||||||| | ||||||||    
T  18962127 taactttattttatcttttgttataaaaatagctaatacataa 18962169  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 5045248 - 5045288
Alignment:
Q  8 actttattttatcttttattataaaaataggtcatacataa 48  Q
    ||||||||||||||||| |||||||||||| | ||||||||    
T  5045248 actttattttatcttttgttataaaaatagcttatacataa 5045288  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 21193977 - 21193934
Alignment:
Q  8 actttattttatcttttattataaaaataggtcatacataatca 51  Q
    |||||||||||||||||| ||||||||||| | |||||||||||    
T  21193977 actttattttatcttttactataaaaatagcttatacataatca 21193934  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 37
Target Start/End: Complemental strand, 30770864 - 30770833
Alignment:
Q  6 taactttattttatcttttattataaaaatag 37  Q
    ||||||||||||||||||||||||||||||||    
T  30770864 taactttattttatcttttattataaaaatag 30770833  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 8422928 - 8422968
Alignment:
Q  8 actttattttatcttttattataaaaataggtcatacataa 48  Q
    ||||||||||||||||| |||||||||||| | ||||||||    
T  8422928 actttattttatctttttttataaaaatagcttatacataa 8422968  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 4558779 - 4558737
Alignment:
Q  6 taactttattttatcttttattataaaaataggtcatacataa 48  Q
    ||||||||||||||||||||||||| |||||| | ||||||||    
T  4558779 taactttattttatcttttattatagaaatagcttatacataa 4558737  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 37
Target Start/End: Original strand, 31315544 - 31315573
Alignment:
Q  8 actttattttatcttttattataaaaatag 37  Q
    ||||||||||||||||||||||||||||||    
T  31315544 actttattttatcttttattataaaaatag 31315573  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 10616792 - 10616838
Alignment:
Q  2 aaaataactttattttatcttttattataaaaataggtcatacataa 48  Q
    |||||||||| ||||||||||||| ||||||||||| | ||||||||    
T  10616792 aaaataacttcattttatcttttactataaaaatagattatacataa 10616838  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 2514681 - 2514641
Alignment:
Q  8 actttattttatcttttattataaaaataggtcatacataa 48  Q
    ||||||||||||||||||||||| |||||| | ||||||||    
T  2514681 actttattttatcttttattatagaaatagcttatacataa 2514641  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 36070231 - 36070189
Alignment:
Q  6 taactttattttatcttttattataaaaataggtcatacataa 48  Q
    ||||||||||||||||||| ||||||||||||  |||||||||    
T  36070231 taactttattttatcttttgttataaaaatagcccatacataa 36070189  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 15581096 - 15581055
Alignment:
Q  7 aactttattttatcttttattataaaaataggtcatacataa 48  Q
    |||||||||||||||||| |||||||||||| |||| |||||    
T  15581096 aactttattttatcttttgttataaaaatagctcatgcataa 15581055  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 17420182 - 17420142
Alignment:
Q  8 actttattttatcttttattataaaaataggtcatacataa 48  Q
    ||||||||||||||||| |||||||||||| | ||||||||    
T  17420182 actttattttatcttttcttataaaaatagtttatacataa 17420142  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 3501057 - 3501105
Alignment:
Q  8 actttattttatcttttattataaaaataggtcatacataatcattatg 56  Q
    ||||||||||||||||||||||| || ||| | |||||||| |||||||    
T  3501057 actttattttatcttttattatataattagcttatacataagcattatg 3501105  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 48157211 - 48157251
Alignment:
Q  8 actttattttatcttttattataaaaataggtcatacataa 48  Q
    ||||||||||||||||||||||| ||||| || ||||||||    
T  48157211 actttattttatcttttattatagaaataagttatacataa 48157251  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 11054165 - 11054125
Alignment:
Q  8 actttattttatcttttattataaaaataggtcatacataa 48  Q
    ||||||||||||||||||||||| |||||| | ||||||||    
T  11054165 actttattttatcttttattatagaaatagcttatacataa 11054125  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 38829726 - 38829766
Alignment:
Q  8 actttattttatcttttattataaaaataggtcatacataa 48  Q
    |||| ||||||||||||||||||||||||||| ||| ||||    
T  38829726 acttaattttatcttttattataaaaataggttatatataa 38829766  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 35394792 - 35394832
Alignment:
Q  8 actttattttatcttttattataaaaataggtcatacataa 48  Q
    ||||||||||||||||||||||| |||||| | ||||||||    
T  35394792 actttattttatcttttattatagaaatagattatacataa 35394832  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 36
Target Start/End: Complemental strand, 48397625 - 48397597
Alignment:
Q  8 actttattttatcttttattataaaaata 36  Q
    |||||||||||||||||||||||||||||    
T  48397625 actttattttatcttttattataaaaata 48397597  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 49465747 - 49465783
Alignment:
Q  1 aaaaataactttattttatcttttattataaaaatag 37  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  49465747 aaaattaactttattttatcttttgttataaaaatag 49465783  T

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