View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_287 (Length: 245)
Name: NF11557A_low_287
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_287 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 15 - 245
Target Start/End: Complemental strand, 38265714 - 38265484
Alignment:
| Q |
15 |
gagaaagaatatagaatttctattaagcttaatcaatgcacgatcatcgtcggcggcatagaagtttttgaaatactcataaagaccgtatttgaaccct |
114 |
Q |
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| T |
38265714 |
gagaaagaatatagaatttctattaagcttaatcaatgcacgatcatcgtcggcggcatagaagtttttgaaatactcataaagaccgtatttgaaccct |
38265615 |
T |
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| Q |
115 |
ccttgaataccatatccacataatttgccagaccaacctctccaaagagcataagaaccttcctctttccaaatggtggcaatgccggagagaattccat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38265614 |
ccttgaataccatatccacataatttgccagaccaacctctccaaagagcataagaaccttcctctttccaaatggtggcaatgccggagagaattccat |
38265515 |
T |
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| Q |
215 |
tgttcttgtatttttctggattgacttgcat |
245 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
38265514 |
tgttcttgtatttttctggattgacttgcat |
38265484 |
T |
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