View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_288 (Length: 245)
Name: NF11557A_low_288
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_288 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 7 - 176
Target Start/End: Complemental strand, 50222889 - 50222720
Alignment:
| Q |
7 |
aagataaaataagttttcctagcagataatgctacttattccagttaatattaggtcagaaaatgaaaggacataagataagacttttggttttatgttt |
106 |
Q |
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| T |
50222889 |
aagataaaataagttttcctagcagataatgctacttattccagttaatattaggtcagaaaatgaaaggacataagataagacttttggttttatgttt |
50222790 |
T |
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| Q |
107 |
gatgcataataagagtagaataatacaagacagagttaagaaagatgatacattttggtttcgccttttt |
176 |
Q |
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| T |
50222789 |
gatgcataataagagtagaataatacaagacagagttaagaaagatgatacattttggtttcgccttttt |
50222720 |
T |
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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 176 - 243
Target Start/End: Complemental strand, 50222640 - 50222573
Alignment:
| Q |
176 |
tcacttgaaaataaatatttacagttttgattgaaaaacaaaagataagaataactttgcattctcta |
243 |
Q |
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| T |
50222640 |
tcacttgaaaataaatatttacagttttgattgaaaaacaaaagataagaataactttgcattctcta |
50222573 |
T |
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