View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11557A_low_29 (Length: 431)

Name: NF11557A_low_29
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11557A_low_29
NF11557A_low_29
[»] chr3 (21 HSPs)
chr3 (199-413)||(9101182-9101396)
chr3 (200-413)||(9029068-9029282)
chr3 (199-413)||(9023404-9023618)
chr3 (199-413)||(8746908-8747122)
chr3 (199-413)||(9026108-9026322)
chr3 (231-413)||(9034606-9034788)
chr3 (250-413)||(9015428-9015590)
chr3 (263-393)||(9108812-9108942)
chr3 (242-387)||(8957118-8957263)
chr3 (241-377)||(8965272-8965408)
chr3 (247-377)||(8962563-8962693)
chr3 (245-387)||(8755581-8755723)
chr3 (247-398)||(9019290-9019441)
chr3 (256-383)||(9112118-9112245)
chr3 (240-377)||(8988340-8988477)
chr3 (56-102)||(9101045-9101091)
chr3 (57-96)||(9025981-9026020)
chr3 (57-96)||(9034446-9034485)
chr3 (20-59)||(9100959-9100998)
chr3 (57-96)||(9023277-9023316)
chr3 (58-102)||(8746795-8746839)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 199 - 413
Target Start/End: Original strand, 9101182 - 9101396
Alignment:
Q  199 gctatgaagttcttcccctcctttatgttcatcatcttcgccgccaccgtggcctctgcccaaaacctcagtccctcgttggctccagcaccaggccctg 298  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9101182 gctatgaagttcttccccttctttatggtcatcatcttcgccgccaccgtggcctctgcccaaaacctcagtccctcgttggctccagcaccaggccctg 9101281  T
Q  299 atcctggagctgctggatctgttacaagttcagtggctatgatcggagtttcaattgtattgtcaatgctcgccatctttaagcactaaaaacatgatga 398  Q
    || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9101282 atgctggagctgctggttctgttacaagttcagtggctatgatcggagtttcaattgtattgtcaatgctcgccatctttaagcactaaaaacatgatga 9101381  T
Q  399 ttgcacttattttct 413  Q
    |||||||||||||||    
T  9101382 ttgcacttattttct 9101396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 200 - 413
Target Start/End: Original strand, 9029068 - 9029282
Alignment:
Q  200 ctatgaagttcttcccctcctttatgttcatcatcttcgccgccaccgtggcctctgcccaaaacctcagtccctcgttggctccagcaccaggccctga 299  Q
    |||||||||||||| ||| |||| || ||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||| |||||    
T  9029068 ctatgaagttcttctccttctttttggtcatcatcttcgccgccaccgtggcctctgcccaagaccttagtccttcgttggctccagcaccaggtcctga 9029167  T
Q  300 tcctggagctgctggatctgttacaagttcagtggctatgatcggagtttcaattgtattgtcaatgctcgccatctttaagcactaaaaacatgat-ga 398  Q
    | ||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||    
T  9029168 tgctggagctgctggatctattacaagttcagcggctatgatcggagtttcaattgtgttgtcaatgctcgccatcttcaagcactaaaaacatgatgga 9029267  T
Q  399 ttgcacttattttct 413  Q
    || ||||||||||||    
T  9029268 ttccacttattttct 9029282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 199 - 413
Target Start/End: Original strand, 9023404 - 9023618
Alignment:
Q  199 gctatgaagttcttcccctcctttatgttcatcatcttcgccgccaccgtggcctctgcccaaaacctcagtccctcgttggctccagcaccaggccctg 298  Q
    ||||| ||||||||| ||| |||| || ||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| |||||||| ||||    
T  9023404 gctataaagttcttctccttctttttggtcatcatcttcgccgccacagtggcctctgcccaagaccttagtccctcgttggctccggcaccaggtcctg 9023503  T
Q  299 atcctggagctgctggatctgttacaagttcagtggctatgatcggagtttcaattgtattgtcaatgctcgccatctttaagcactaaaaacatgatga 398  Q
    || |||||||||||||||||||||||||||||||||||||| ||||| ||||  ||||||||||||||||||||||||| ||||||||||||||||||||    
T  9023504 atgctggagctgctggatctgttacaagttcagtggctatggtcggaatttcggttgtattgtcaatgctcgccatcttcaagcactaaaaacatgatga 9023603  T
Q  399 ttgcacttattttct 413  Q
    || |||| |||||||    
T  9023604 ttccactcattttct 9023618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 199 - 413
Target Start/End: Original strand, 8746908 - 8747122
Alignment:
Q  199 gctatgaagttcttcccctcctttatgttcatcatcttcgccgccaccgtggcctctgcccaaaacctcagtccctcgttggctccagcaccaggccctg 298  Q
    ||||||||||||||| ||| |||| |  || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  8746908 gctatgaagttcttctccttctttttcgtcttcatcttcgccgccaccctggcctctgcccaagacctcagtccctcgttggctccagcaccaggtcctg 8747007  T
Q  299 atcctggagctgctggatctgttacaagttcagtggctatgatcggagtttcaattgtattgtcaatgctcgccatctttaagcactaaaaacatgatga 398  Q
    ||  |||||||| |||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||| |||||||    
T  8747008 atgttggagctgttggatctgttacaaattcagtggctatgattggagtttcaattgtgttgtcaatgctcgccatcttcaagcactaaaaaaatgatga 8747107  T
Q  399 ttgcacttattttct 413  Q
    || |||| |||||||    
T  8747108 ttccactcattttct 8747122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 199 - 413
Target Start/End: Original strand, 9026108 - 9026322
Alignment:
Q  199 gctatgaagttcttcccctcctttatgttcatcatcttcgccgccaccgtggcctctgcccaaaacctcagtccctcgttggctccagcaccaggccctg 298  Q
    ||||||||||||||| ||| |||| || ||||||||||||||||||||||||||||||||||| | || ||||| ||||||||||||||||||||  |||    
T  9026108 gctatgaagttcttctccttctttttggtcatcatcttcgccgccaccgtggcctctgcccaagatcttagtccttcgttggctccagcaccaggttctg 9026207  T
Q  299 atcctggagctgctggatctgttacaagttcagtggctatgatcggagtttcaattgtattgtcaatgctcgccatctttaagcactaaaaacatgatga 398  Q
    || |||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||| || |||||||||||| ||||    
T  9026208 atgctggagttgctggatctgttacaagttcagtggcaatgatcggagtttcagttgtattgtcaatgatcgccatcttcaaacactaaaaacataatga 9026307  T
Q  399 ttgcacttattttct 413  Q
    || ||||||||||||    
T  9026308 ttccacttattttct 9026322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 231 - 413
Target Start/End: Original strand, 9034606 - 9034788
Alignment:
Q  231 catcttcgccgccaccgtggcctctgcccaaaacctcagtccctcgttggctccagcaccaggccctgatcctggagctgctggatctgttacaagttca 330  Q
    ||||||||| |||| |||||||||||||||| |||| ||||| ||||||||||| |||||||| |||||| |||||||||||||||||||| |||||||     
T  9034606 catcttcgctgccatcgtggcctctgcccaagaccttagtccttcgttggctccggcaccaggtcctgatgctggagctgctggatctgttgcaagttcg 9034705  T
Q  331 gtggctatgatcggagtttcaattgtattgtcaatgctcgccatctttaagcactaaaaacatgatgattgcacttattttct 413  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  9034706 gtggctatgatcggagtttcaattgtgttgtcaatgctcgccatcttcaagcactaaaaacatgatgatttcacttattttct 9034788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 250 - 413
Target Start/End: Original strand, 9015428 - 9015590
Alignment:
Q  250 gcctctgcccaaaacctcagtccctcgttggctccagcaccaggccctgatcctggagctgctggatctgttacaagttcagtggctatgatcggagttt 349  Q
    ||||| || ||| ||||||| ||||||||| |||| |||||||| |||||| | ||||| ||||||| |||||||| ||||||| ||||| | |||||||    
T  9015428 gcctcggctcaagacctcagcccctcgttgtctccggcaccaggtcctgatgccggagcagctggatatgttacaaattcagtgactatggttggagttt 9015527  T
Q  350 caattgtattgtcaatgctcgccatctttaagcactaaaaacatgatgattgcacttattttct 413  Q
    |||||||||||||||||||||||||||| || ||||||||| || |||||| ||||||||||||    
T  9015528 caattgtattgtcaatgctcgccatcttcaaacactaaaaa-attatgattccacttattttct 9015590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 263 - 393
Target Start/End: Original strand, 9108812 - 9108942
Alignment:
Q  263 acctcagtccctcgttggctccagcaccaggccctgatcctggagctgctggatctgttacaagttcagtggctatgatcggagtttcaattgtattgtc 362  Q
    ||||||||||||| |||||||||||| |||| ||||||   |||||||| ||||||||||||||||||||||| |||||||||| ||||||||| |||||    
T  9108812 acctcagtccctcattggctccagcatcaggtcctgatgtcggagctgccggatctgttacaagttcagtggccatgatcggagcttcaattgtcttgtc 9108911  T
Q  363 aatgctcgccatctttaagcactaaaaacat 393  Q
    |||||| ||  |||| ||| |||||||||||    
T  9108912 aatgcttgcactcttgaagaactaaaaacat 9108942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 242 - 387
Target Start/End: Original strand, 8957118 - 8957263
Alignment:
Q  242 ccaccgtggcctctgcccaaaacctcagtccctcgttggctccagcaccaggccctgatcctggagctgctggatctgttacaagttcagtggctatgat 341  Q
    ||||||||||||| |||||| |||| ||||| ||||| ||||||||||| || |||||  |||||||||| |||| |||||||||||| |||||||||||    
T  8957118 ccaccgtggcctcggcccaagaccttagtccgtcgttagctccagcacccggtcctgacgctggagctgccggatttgttacaagttctgtggctatgat 8957217  T
Q  342 cggagtttcaattgtattgtcaatgctcgccatctttaagcactaa 387  Q
    ||||| |||||||||  |||||||| ||||||| || ||| |||||    
T  8957218 cggagcttcaattgtgctgtcaatggtcgccattttcaagaactaa 8957263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 241 - 377
Target Start/End: Original strand, 8965272 - 8965408
Alignment:
Q  241 gccaccgtggcctctgcccaaaacctcagtccctcgttggctccagcaccaggccctgatcctggagctgctggatctgttacaagttcagtggctatga 340  Q
    ||||| |||||||| |||||| |||| ||||| |||||||||||||||||| | |||||  |||||||||| |||||||||||||||||  |||| ||||    
T  8965272 gccacagtggcctcggcccaagaccttagtccgtcgttggctccagcaccaagtcctgacgctggagctgccggatctgttacaagttctatggcaatga 8965371  T
Q  341 tcggagtttcaattgtattgtcaatgctcgccatctt 377  Q
    |||||| |||||||||  ||||||||||||| |||||    
T  8965372 tcggagcttcaattgtgctgtcaatgctcgcaatctt 8965408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 247 - 377
Target Start/End: Original strand, 8962563 - 8962693
Alignment:
Q  247 gtggcctctgcccaaaacctcagtccctcgttggctccagcaccaggccctgatcctggagctgctggatctgttacaagttcagtggctatgatcggag 346  Q
    |||||||| |||||| |||| ||||||||||| |||||||||||||| |||||| |||||| ||| ||||||||| || |||| ||||||||||||||||    
T  8962563 gtggcctcggcccaagaccttagtccctcgttagctccagcaccaggtcctgatgctggagttgccggatctgttgcaggttctgtggctatgatcggag 8962662  T
Q  347 tttcaattgtattgtcaatgctcgccatctt 377  Q
     |||||||||  | ||||||||||| |||||    
T  8962663 cttcaattgtgctttcaatgctcgctatctt 8962693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 245 - 387
Target Start/End: Original strand, 8755581 - 8755723
Alignment:
Q  245 ccgtggcctctgcccaaaacctcagtccctcgttggctccagcaccaggccctgatcctggagctgctggatctgttacaagttcagtggctatgatcgg 344  Q
    ||||||| || || ||| |||||||||||||||||||||| |||||||  |||||| | || ||||||||||||||||||| |||||| |||||||| ||    
T  8755581 ccgtggcttcggctcaagacctcagtccctcgttggctccggcaccagatcctgatgccggtgctgctggatctgttacaaattcagttgctatgattgg 8755680  T
Q  345 agtttcaattgtattgtcaatgctcgccatctttaagcactaa 387  Q
    || ||| ||| | ||||| |||||||||||||| ||| |||||    
T  8755681 agcttcgattattttgtctatgctcgccatcttcaagaactaa 8755723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 247 - 398
Target Start/End: Original strand, 9019290 - 9019441
Alignment:
Q  247 gtggcctctgcccaaaacctcagtccctcgttggctccagcaccaggccctgatcctggagctgctggatctgttacaagttcagtggctatgatcggag 346  Q
    |||||||| || ||| |||| |||||||| |  ||||| |||||||| ||||||  ||| |||  |||||||||||| |||||||| |||||||||||||    
T  9019290 gtggcctcggctcaagaccttagtccctcatccgctccggcaccaggtcctgatgttggggcttgtggatctgttacgagttcagttgctatgatcggag 9019389  T
Q  347 tttcaattgtattgtcaatgctcgccatctttaagcactaaaaacatgatga 398  Q
     ||||||||| ||||||||||| |||||||| ||| ||| ||||||| ||||    
T  9019390 cttcaattgtgttgtcaatgcttgccatcttgaagaactgaaaacatcatga 9019441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 383
Target Start/End: Original strand, 9112118 - 9112245
Alignment:
Q  256 gcccaaaacctcagtccctcgttggctccagcaccaggccctgatcctggagctgctggatctgttacaagttcagtggctatgatcggagtttcaattg 355  Q
    |||||| |||||||||||||||||||||| |||||||  |||||| | ||||||| ||||||| |||||| | ||||||||||||| |||| ||  ||||    
T  9112118 gcccaagacctcagtccctcgttggctccggcaccagcacctgataccggagctgttggatctcttacaaatccagtggctatgatgggagctttgattg 9112217  T
Q  356 tattgtcaatgctcgccatctttaagca 383  Q
    | ||||||||||| || |||||||||||    
T  9112218 tgttgtcaatgcttgctatctttaagca 9112245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 240 - 377
Target Start/End: Original strand, 8988340 - 8988477
Alignment:
Q  240 cgccaccgtggcctctgcccaaaacctcagtccctcgttggctccagcaccaggccctgatcctggagctgctggatctgttacaagttcagtggctatg 339  Q
    |||| |||| ||||| |||||| |||| |||||||||||| ||||||||||||| |||||   |||||||||  | |||| ||||||||  |||||||||    
T  8988340 cgccgccgtagcctcggcccaagaccttagtccctcgttgtctccagcaccaggtcctgacgttggagctgccagttctgctacaagttatgtggctatg 8988439  T
Q  340 atcggagtttcaattgtattgtcaatgctcgccatctt 377  Q
    ||||||| |||||| ||| ||||||||||||| |||||    
T  8988440 atcggagcttcaatcgtactgtcaatgctcgctatctt 8988477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 9101045 - 9101091
Alignment:
Q  56 ctcccttataaatactcccacaccctctcaattctcatatctcccac 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  9101045 ctcccttataaatactcccacaccctctcaattctcatatctcccac 9101091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 96
Target Start/End: Original strand, 9025981 - 9026020
Alignment:
Q  57 tcccttataaatactcccacaccctctcaattctcatatc 96  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  9025981 tcccttataaatactctcacaccctctcaattctcatatc 9026020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 96
Target Start/End: Original strand, 9034446 - 9034485
Alignment:
Q  57 tcccttataaatactcccacaccctctcaattctcatatc 96  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  9034446 tcccttataaatactctcacaccctctcaattctcatatc 9034485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 9100959 - 9100998
Alignment:
Q  20 ctaacgaccaaataattcataatatattttcacaagctcc 59  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  9100959 ctaacgaccaaatcattcataatatattttcacaagctcc 9100998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 96
Target Start/End: Original strand, 9023277 - 9023316
Alignment:
Q  57 tcccttataaatactcccacaccctctcaattctcatatc 96  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  9023277 tcccttataaatactttcacaccctctcaattctcatatc 9023316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 8746795 - 8746839
Alignment:
Q  58 cccttataaatactcccacaccctctcaattctcatatctcccac 102  Q
    |||||||||||||| ||| || ||||||||||||||||| |||||    
T  8746795 cccttataaatacttccaaactctctcaattctcatatcacccac 8746839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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