View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11557A_low_292 (Length: 244)
Name: NF11557A_low_292
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_292 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 24666621 - 24666844
Alignment:
| Q |
6 |
agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24666621 |
agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta |
24666720 |
T |
|
| Q |
106 |
cagatttcagagtagtcgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaa |
205 |
Q |
| |
|
|||||||||||| ||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||| ||||||||| | |
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| T |
24666721 |
cagatttcagaggagttgaaaaagatgaagaaatataatagggacaagattgtatgttaaaatgtctagatgttctcaatcttattttcaataaatctca |
24666820 |
T |
|
| Q |
206 |
accattgattcaatcaaacggtat |
229 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
24666821 |
accattgattcaatcaaacggtat |
24666844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 34941782 - 34941558
Alignment:
| Q |
6 |
agttatcaacaccaagaaattgg-ttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt |
104 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34941782 |
agttatcaacaccaagaaattgggttcctgtcattttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt |
34941683 |
T |
|
| Q |
105 |
acagatttcagagtagtcgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatcta |
204 |
Q |
| |
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||||||||||| | ||| ||| |||||||||| |||||| |||||||||||| ||||||||||||||| |||||||||| |||||||| ||||||||| |
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| T |
34941682 |
acagatttcaggggagttgaagaggatgaagagatataacagggacaagattgtatgttaaaatgtctagatgttctcaactttattttcaataaatctc |
34941583 |
T |
|
| Q |
205 |
aaccattgattcaatcaaacggtat |
229 |
Q |
| |
|
|||| |||||||||||||||||||| |
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|
| T |
34941582 |
aaccgttgattcaatcaaacggtat |
34941558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 18363426 - 18363645
Alignment:
| Q |
6 |
agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta |
105 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| |
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|
| T |
18363426 |
agttatcaacaccaagaaattggttcatgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgc--gcgtattctagattta |
18363523 |
T |
|
| Q |
106 |
cagatttcagagtagtcgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaa |
205 |
Q |
| |
|
|||||||||| | ||| | ||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||| | |
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|
| T |
18363524 |
cagatttcaggggagttg--aaggatgaagaaatataatagggacaagaatgtatgttaaaatgtctagatgttctcaattttattttcaataaatctca |
18363621 |
T |
|
| Q |
206 |
accattgattcaatcaaacggtat |
229 |
Q |
| |
|
||||||||||||||| || ||||| |
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|
| T |
18363622 |
accattgattcaatcgaatggtat |
18363645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 36599502 - 36599283
Alignment:
| Q |
6 |
agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta |
105 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| |
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|
| T |
36599502 |
agttatcaacaccaagaaattggttcatgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgc--gcgtattctagattta |
36599405 |
T |
|
| Q |
106 |
cagatttcagagtagtcgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaa |
205 |
Q |
| |
|
|||||||||| | ||| | ||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||| | |
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|
| T |
36599404 |
cagatttcaggggagttg--aaggatgaagaaatataatagggacaagaatgtatgttaaaatgtctagatgttctcaattttattttcaataaatctca |
36599307 |
T |
|
| Q |
206 |
accattgattcaatcaaacggtat |
229 |
Q |
| |
|
||||||||||||||| || ||||| |
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|
| T |
36599306 |
accattgattcaatcgaatggtat |
36599283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 26240615 - 26240724
Alignment:
| Q |
6 |
agttatcaacaccaagaaattgg-ttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt |
104 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26240615 |
agttatcaacaccaagaaattgggtttctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt |
26240714 |
T |
|
| Q |
105 |
acagatttca |
114 |
Q |
| |
|
||| |||||| |
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|
| T |
26240715 |
acatatttca |
26240724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 26240779 - 26240863
Alignment:
| Q |
145 |
agggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaaaccattgattcaatcaaacggtat |
229 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
26240779 |
agggacaagattgtatgttaaaatgtctagatgttctcaatattattttcaataaatctcaaccattgattcaatcaaacggtat |
26240863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 66 - 236
Target Start/End: Complemental strand, 19697568 - 19697406
Alignment:
| Q |
66 |
aatggatgtagatgttttctgcaagcatcttctagatttacagatttcagagtagtcgaaaaggatgaagaaatataatagggacaagatttaatgttaa |
165 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||| | || | ||| ||||| |||||||||||||||||||||||||||| ||||||| |
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|
| T |
19697568 |
aatggatgtagatgttttccgcaagcatcttctaaattt-------ttagtggagttgaaaatgatgaagaaatataatagggacaagattgtatgttaa |
19697476 |
T |
|
| Q |
166 |
aatgtctatatgttctcaattttatttttaataaatctaaaccattgattcaatcaaacggtatattattc |
236 |
Q |
| |
|
|||||||| |||||||||||||| |||| || |||||| || ||||||||||||||||| |||| |||||| |
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|
| T |
19697475 |
aatgtctagatgttctcaatttt-ttttcaaaaaatctcaaacattgattcaatcaaacagtattttattc |
19697406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 13265651 - 13265597
Alignment:
| Q |
175 |
atgttctcaattttatttttaataaatctaaaccattgattcaatcaaacggtat |
229 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||| |||| |||||||| |
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|
| T |
13265651 |
atgttctcatttttatttttaataattctaaaccattgatttaatccaacggtat |
13265597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 53 - 229
Target Start/End: Complemental strand, 53242900 - 53242722
Alignment:
| Q |
53 |
tttttcattttcaaatggatgtagatgttttctgcaagcatcttctagatttacaga-tttcagagtagtcgaaaaggatgaagaaatataataggg-ac |
150 |
Q |
| |
|
|||||||||| | ||||||| ||||||||||||||| | ||||| |||||||||||| ||| |||| ||| ||| |||||||| ||||||||||||| || |
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|
| T |
53242900 |
tttttcatttccgaatggatatagatgttttctgcatgtatcttttagatttacagattttaagag-agttgaagaggatgaacaaatataatagggaac |
53242802 |
T |
|
| Q |
151 |
aagatttaatgttaaaatgtctatatgttctc-aattttatttttaataaatctaaaccattgattcaatcaaacggtat |
229 |
Q |
| |
|
|| ||| | || |||||||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
53242801 |
aaaattgtaagtgaaaatgtctagatgttctcaaattttattttcaataaatcttaaccattgattcaatcaaatggtat |
53242722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 43479315 - 43479391
Alignment:
| Q |
30 |
tcctgtcactttcccatatctggtttttcatttt-caaatggatgtagatgttttctgcaagcatcttctagattta |
105 |
Q |
| |
|
|||| ||||||| || | |||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43479315 |
tcctatcacttttccgtctctgttttttcatttttcgaatggatgtagatgttttctgcaagcatcttctagattta |
43479391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 43479404 - 43479456
Alignment:
| Q |
129 |
gatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttct |
181 |
Q |
| |
|
||||||||||||||||||| |||| ||| |||| |||||||||| ||||||| |
|
|
| T |
43479404 |
gatgaagaaatataataggaacaatattgtatgtgaaaatgtctagatgttct |
43479456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 32566479 - 32566563
Alignment:
| Q |
134 |
agaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaaaccattgattcaatc |
220 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||| || ||||||||||||| |||| ||||||||| |||||||| |||||| |
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|
| T |
32566479 |
agaaatataatagggacaagattgtatgtgaaaatgtttagatgttctcaattt--ttttcaataaatcttgaccattgaatcaatc |
32566563 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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