View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_293 (Length: 244)
Name: NF11557A_low_293
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_293 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 21 - 234
Target Start/End: Complemental strand, 29530550 - 29530337
Alignment:
| Q |
21 |
acttcctaatttttcagcttattcaattaaagatagtattttctctttatatagtgattgcatggaggggcaccgtgacatacatagaatggatatacga |
120 |
Q |
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| T |
29530550 |
acttcctaatttttcagcttattcaattaaagatagtattttctctttatatagtgattgcatggaggggcaccgtgacatacatagaatggatatacga |
29530451 |
T |
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| Q |
121 |
cctaaaagacatactacacgaagcaaacttcaaaaacgacccatcaatcaaagtagaaacaggattcttcgatttatacactaagaaagaacaatcatgc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
29530450 |
cctaaaagacatactacacgaagcaaacttcaaaaacgacccatcaatcaaagtagaaacaggattctacgatttatacaccaagaaagaacaatcatgc |
29530351 |
T |
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| Q |
221 |
acttattgttcatt |
234 |
Q |
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|||||||||||||| |
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| T |
29530350 |
acttattgttcatt |
29530337 |
T |
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