View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_298 (Length: 243)
Name: NF11557A_low_298
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_298 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 5613452 - 5613228
Alignment:
| Q |
1 |
aatatgctgaagttcttatcaagcagtattctccttatataaaggtatatctctttcagctttttatatacgtgtgtgttatttgtatatatactaaata |
100 |
Q |
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| T |
5613452 |
aatatgctgaagttcttatcaagcagtattctccttatataaaggtatatctctttcagctttttatatacgtgtgtgttatttgtatatatactaaata |
5613353 |
T |
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| Q |
101 |
tcatcccgttagagaaatataaacaaggtgtgagttcattataatactttagaagcaaaacaaggtgtgagtattactttagaagcaaaatcatnnnnnn |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5613352 |
tcatcccgttagagaaatataaacaaggtgtgagttcattataatactttagaagcaaaacaaggtgtgagtattactttagaagcaaaatcataaaaaa |
5613253 |
T |
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| Q |
201 |
ngaacgtgtatcactgctaaattgc |
225 |
Q |
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|||||||||||| ||||||||||| |
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| T |
5613252 |
agaacgtgtatcattgctaaattgc |
5613228 |
T |
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