View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11557A_low_3 (Length: 628)

Name: NF11557A_low_3
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11557A_low_3
NF11557A_low_3
[»] chr6 (22 HSPs)
chr6 (21-463)||(13113954-13114397)
chr6 (372-465)||(13202914-13203008)
chr6 (143-260)||(13149549-13149670)
chr6 (362-415)||(13171789-13171842)
chr6 (25-81)||(34786451-34786507)
chr6 (25-82)||(33549126-33549183)
chr6 (213-257)||(9944901-9944945)
chr6 (391-423)||(13202792-13202824)
chr6 (499-530)||(9699185-9699216)
chr6 (24-59)||(12216789-12216824)
chr6 (500-530)||(22353298-22353328)
chr6 (492-530)||(24051247-24051285)
chr6 (25-82)||(6776604-6776661)
chr6 (25-82)||(12188300-12188357)
chr6 (25-62)||(12234504-12234541)
chr6 (25-62)||(13227155-13227192)
chr6 (25-62)||(28841456-28841493)
chr6 (29-82)||(32201886-32201939)
chr6 (497-569)||(1258430-1258502)
chr6 (498-530)||(6159752-6159784)
chr6 (498-562)||(7678644-7678708)
chr6 (362-414)||(13149394-13149446)
[»] chr1 (27 HSPs)
chr1 (503-628)||(52947350-52947475)
chr1 (506-574)||(46651367-46651435)
chr1 (503-574)||(46652766-46652837)
chr1 (488-569)||(33257869-33257950)
chr1 (488-569)||(33278041-33278122)
chr1 (17-81)||(15786309-15786373)
chr1 (25-74)||(12587300-12587349)
chr1 (25-82)||(17745253-17745310)
chr1 (26-82)||(19528325-19528381)
chr1 (20-63)||(7219910-7219953)
chr1 (498-569)||(16673246-16673317)
chr1 (500-530)||(10771694-10771724)
chr1 (26-80)||(12259284-12259338)
chr1 (25-82)||(8177179-8177236)
chr1 (25-62)||(8904456-8904493)
chr1 (25-62)||(18037610-18037647)
chr1 (25-82)||(33700770-33700827)
chr1 (497-530)||(44503185-44503218)
chr1 (25-82)||(44961787-44961844)
chr1 (25-74)||(51814524-51814573)
chr1 (27-75)||(3334798-3334845)
chr1 (498-530)||(4029546-4029578)
chr1 (26-82)||(17410253-17410309)
chr1 (26-62)||(24047100-24047136)
chr1 (498-542)||(28251929-28251973)
chr1 (25-61)||(50901625-50901661)
chr1 (26-62)||(52029935-52029971)
[»] scaffold0140 (1 HSPs)
scaffold0140 (498-628)||(35480-35613)
[»] chr3 (26 HSPs)
chr3 (498-574)||(8392788-8392864)
chr3 (498-574)||(8391399-8391475)
chr3 (498-574)||(45981405-45981481)
chr3 (25-82)||(21960573-21960630)
chr3 (22-75)||(30311335-30311388)
chr3 (25-82)||(51903875-51903932)
chr3 (25-81)||(40063642-40063698)
chr3 (506-574)||(45982784-45982852)
chr3 (26-82)||(47454615-47454671)
chr3 (499-530)||(3990874-3990905)
chr3 (30-81)||(9557343-9557394)
chr3 (25-80)||(28703401-28703456)
chr3 (25-75)||(10445136-10445186)
chr3 (17-63)||(19154672-19154718)
chr3 (500-530)||(26052205-26052235)
chr3 (25-75)||(30510196-30510246)
chr3 (29-75)||(44743856-44743902)
chr3 (500-530)||(54600133-54600163)
chr3 (29-82)||(2667884-2667937)
chr3 (25-74)||(4844508-4844557)
chr3 (25-74)||(4870204-4870253)
chr3 (17-62)||(33899656-33899701)
chr3 (25-82)||(36720403-36720460)
chr3 (30-63)||(39976433-39976466)
chr3 (498-530)||(25166775-25166807)
chr3 (23-71)||(52769978-52770026)
[»] chr5 (16 HSPs)
chr5 (506-574)||(42776803-42776871)
chr5 (503-574)||(42775423-42775494)
chr5 (26-75)||(84853-84902)
chr5 (25-82)||(27596349-27596406)
chr5 (25-82)||(29075803-29075860)
chr5 (25-82)||(37258363-37258420)
chr5 (19-62)||(16773849-16773892)
chr5 (27-73)||(9985231-9985277)
chr5 (500-530)||(35989611-35989641)
chr5 (26-80)||(41165627-41165681)
chr5 (25-82)||(12883862-12883919)
chr5 (25-82)||(22020859-22020916)
chr5 (501-530)||(23912221-23912250)
chr5 (493-530)||(31024354-31024391)
chr5 (26-82)||(30883196-30883252)
chr5 (498-530)||(35988853-35988885)
[»] scaffold0524 (2 HSPs)
scaffold0524 (506-572)||(9056-9122)
scaffold0524 (500-574)||(7698-7772)
[»] chr2 (21 HSPs)
chr2 (24-82)||(26545862-26545920)
chr2 (503-574)||(20587042-20587113)
chr2 (503-574)||(20588444-20588515)
chr2 (26-76)||(40791488-40791538)
chr2 (25-73)||(25637182-25637230)
chr2 (26-82)||(37480097-37480153)
chr2 (27-82)||(4438978-4439033)
chr2 (24-82)||(42327391-42327449)
chr2 (28-62)||(42860390-42860424)
chr2 (25-82)||(3677350-3677407)
chr2 (25-82)||(8162062-8162119)
chr2 (498-530)||(2238851-2238883)
chr2 (498-530)||(3150253-3150285)
chr2 (497-541)||(10345165-10345209)
chr2 (26-62)||(19016073-19016109)
chr2 (498-530)||(21716438-21716470)
chr2 (498-530)||(21720227-21720259)
chr2 (498-562)||(28563374-28563438)
chr2 (17-69)||(31573630-31573682)
chr2 (25-73)||(33582004-33582052)
chr2 (26-62)||(39715034-39715070)
[»] chr8 (14 HSPs)
chr8 (497-574)||(35505519-35505596)
chr8 (30-82)||(5801069-5801121)
chr8 (24-82)||(11492069-11492127)
chr8 (25-82)||(968384-968441)
chr8 (498-530)||(9898962-9898994)
chr8 (26-82)||(16852362-16852418)
chr8 (26-82)||(19703485-19703541)
chr8 (503-570)||(25264343-25264410)
chr8 (500-530)||(26636288-26636318)
chr8 (18-71)||(24675502-24675555)
chr8 (497-530)||(37587396-37587429)
chr8 (498-530)||(23154338-23154370)
chr8 (22-82)||(28566127-28566186)
chr8 (22-82)||(28573750-28573809)
[»] chr7 (26 HSPs)
chr7 (29-82)||(45709709-45709762)
chr7 (498-574)||(25008090-25008166)
chr7 (506-574)||(43545348-43545416)
chr7 (506-574)||(25009470-25009538)
chr7 (506-574)||(28849953-28850021)
chr7 (503-574)||(28848561-28848631)
chr7 (494-569)||(31393649-31393724)
chr7 (25-82)||(7309377-7309435)
chr7 (25-74)||(3174957-3175006)
chr7 (496-569)||(40028453-40028526)
chr7 (25-82)||(43215206-43215263)
chr7 (33-80)||(26703149-26703196)
chr7 (503-570)||(43546719-43546786)
chr7 (26-81)||(49050489-49050544)
chr7 (26-72)||(29916806-29916852)
chr7 (25-62)||(2446350-2446387)
chr7 (26-83)||(20335829-20335886)
chr7 (25-62)||(23552160-23552197)
chr7 (497-530)||(23966312-23966345)
chr7 (25-82)||(26459407-26459464)
chr7 (24-61)||(30217922-30217959)
chr7 (25-62)||(37162347-37162384)
chr7 (497-530)||(43901623-43901656)
chr7 (29-82)||(48771960-48772013)
chr7 (494-570)||(21715066-21715142)
chr7 (494-530)||(26776604-26776640)
[»] scaffold1889 (1 HSPs)
scaffold1889 (143-270)||(262-394)
[»] chr4 (23 HSPs)
chr4 (506-574)||(39927939-39928007)
chr4 (495-574)||(39929339-39929418)
chr4 (25-82)||(7949451-7949508)
chr4 (26-75)||(39509099-39509148)
chr4 (26-82)||(30938217-30938273)
chr4 (26-74)||(47044747-47044795)
chr4 (19-82)||(10048002-10048065)
chr4 (498-569)||(44251603-44251674)
chr4 (499-530)||(47848856-47848887)
chr4 (503-569)||(10337107-10337173)
chr4 (500-530)||(35022481-35022511)
chr4 (28-82)||(38869790-38869844)
chr4 (26-63)||(15729523-15729560)
chr4 (29-82)||(21775923-21775976)
chr4 (17-62)||(30557259-30557304)
chr4 (26-75)||(32992641-32992690)
chr4 (25-82)||(37109348-37109405)
chr4 (496-569)||(48713452-48713525)
chr4 (494-534)||(10338195-10338235)
chr4 (498-530)||(15807654-15807686)
chr4 (23-75)||(31826638-31826690)
chr4 (26-82)||(49262682-49262738)
chr4 (26-82)||(55427198-55427254)
[»] scaffold0472 (1 HSPs)
scaffold0472 (497-574)||(9017-9094)
[»] scaffold0369 (1 HSPs)
scaffold0369 (497-574)||(8255-8332)
[»] scaffold0299 (1 HSPs)
scaffold0299 (25-82)||(11550-11607)
[»] scaffold0018 (1 HSPs)
scaffold0018 (503-574)||(193594-193665)
[»] scaffold0258 (1 HSPs)
scaffold0258 (25-82)||(15320-15377)
[»] scaffold0118 (1 HSPs)
scaffold0118 (17-82)||(41622-41687)
[»] scaffold0141 (1 HSPs)
scaffold0141 (490-530)||(10296-10336)
[»] scaffold0009 (1 HSPs)
scaffold0009 (27-82)||(19846-19901)
[»] scaffold1367 (1 HSPs)
scaffold1367 (25-82)||(837-894)
[»] scaffold0194 (1 HSPs)
scaffold0194 (25-82)||(13043-13100)
[»] scaffold0021 (1 HSPs)
scaffold0021 (25-82)||(106070-106127)
[»] scaffold0008 (1 HSPs)
scaffold0008 (25-82)||(49328-49385)


Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 21 - 463
Target Start/End: Original strand, 13113954 - 13114397
Alignment:
Q  21 tcaaagagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaataccttttgatttataactttgtttcctctaaaatgagtatc 120  Q
    |||||||||||| ||||| ||| |||||| |||||||||||   || |||||||| ||||||||||||||||||| ||| ||| ||||||||||||||||    
T  13113954 tcaaagagaatcaaacttcagatctcgaggaggagcacacttcaaggtcccaagccaataccttttgatttataattttatttactctaaaatgagtatc 13114053  T
Q  121 a--agaaatcaataccttttgtagaagtaatgattatagtttgaatgtttatttatgatgtgttccgtatgcataaaatgaaccttaaatattgcatatt 218  Q
    |  ||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  13114054 ataagaaatcaatatcttttgtagaagtaataattatagcttgaatgtttatttatgatgtgttccgtatgcataaaatcaaccttaaatattgcttatt 13114153  T
Q  219 gattcctaaatcaatttaattaccggtgtactagatccattaagaagttgaacacaaccacttttnnnnnnnncatagattagtgtataaaagaaaacaa 318  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||        |||||||| ||||||||||||||||||    
T  13114154 gattcctaaatcaatttaattaccggtgtactagatccactaagaagttgaacacaacctc-tttaaaaaaaacatagattggtgtataaaagaaaacaa 13114252  T
Q  319 tatcatatatctactttcgaaatcagtaaaattactgggcattcaaatgaattaaaccacaatcaccaaaagtgtctccctgttttaaatctaaatccct 418  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13114253 tatcatgtatctactttcgaaatcagtaaaattactgggcattcaaatgaattaaaccacaatcaccaaaagtgtccccctgttttaaatctaaatccct 13114352  T
Q  419 tttatcaattattggacaaaaaattcatgcttataaattcaattt 463  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  13114353 tttatcaattattggacaaaaatttcatgcttataaattcaattt 13114397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 372 - 465
Target Start/End: Original strand, 13202914 - 13203008
Alignment:
Q  372 aaaccacaatcaccaaaagtgtctccctgttttaaatctaaatc-ccttttatcaattattggacaaaaaattcatgcttataaattcaattttt 465  Q
    |||| |||||||||||||||||||| |||||||||||||||||| | ||||||||||  ||| || ||   | ||||||||||||||||||||||    
T  13202914 aaacaacaatcaccaaaagtgtctcgctgttttaaatctaaatcactttttatcaatcgttgtactaattttgcatgcttataaattcaattttt 13203008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 260
Target Start/End: Complemental strand, 13149670 - 13149549
Alignment:
Q  143 aagtaatgattatagtttgaatgtttatttatgatgtgttccgtatgcataaaatgaacctt------aaatattgcatattgattcctaaatcaattta 236  Q
    |||||||||||||| |||||||||| ||||  ||||| || |||||| ||||||| ||||||      |||| ||  ||||||| ||||||||||||| |    
T  13149670 aagtaatgattataatttgaatgttgattt--gatgtatttcgtatggataaaatcaacctttgttataaattttttatattgaatcctaaatcaattaa 13149573  T
Q  237 attaccggtgtactagatccatta 260  Q
    ||||| ||||||||||||||||||    
T  13149572 attactggtgtactagatccatta 13149549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 362 - 415
Target Start/End: Original strand, 13171789 - 13171842
Alignment:
Q  362 caaatgaattaaaccacaatcaccaaaagtgtctccctgttttaaatctaaatc 415  Q
    |||||||| ||||| |||||||||||||||||||| ||||||||||||||||||    
T  13171789 caaatgaactaaacaacaatcaccaaaagtgtctcgctgttttaaatctaaatc 13171842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 34786451 - 34786507
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatac 81  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||||||||| |||||    
T  34786451 agagaatcgaacttgagacttcgagaaggagcacactcccagatcccaagccaatac 34786507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 33549183 - 33549126
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||||||| |||||||||||| ||||||||||||  || |||||||| ||||||    
T  33549183 agagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaatacc 33549126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 9944945 - 9944901
Alignment:
Q  213 catattgattcctaaatcaatttaattaccggtgtactagatcca 257  Q
    |||||||||||||||||||||||||||||   |||||||||||||    
T  9944945 catattgattcctaaatcaatttaattactaatgtactagatcca 9944901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 391 - 423
Target Start/End: Original strand, 13202792 - 13202824
Alignment:
Q  391 tgtctccctgttttaaatctaaatcccttttat 423  Q
    |||||||||||||||||||||||||||||||||    
T  13202792 tgtctccctgttttaaatctaaatcccttttat 13202824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 530
Target Start/End: Complemental strand, 9699216 - 9699185
Alignment:
Q  499 aggtttaaatatgcaaaccgtccctgtaattt 530  Q
    ||||||||||||||||||||||||||||||||    
T  9699216 aggtttaaatatgcaaaccgtccctgtaattt 9699185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 12216824 - 12216789
Alignment:
Q  24 aagagaatcgaacttgagacctcgagaaggagcaca 59  Q
    ||||||||||||| ||||||||||||||||||||||    
T  12216824 aagagaatcgaacctgagacctcgagaaggagcaca 12216789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 530
Target Start/End: Complemental strand, 22353328 - 22353298
Alignment:
Q  500 ggtttaaatatgcaaaccgtccctgtaattt 530  Q
    |||||||||||||||||||||||||||||||    
T  22353328 ggtttaaatatgcaaaccgtccctgtaattt 22353298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 492 - 530
Target Start/End: Original strand, 24051247 - 24051285
Alignment:
Q  492 ttttttaaggtttaaatatgcaaaccgtccctgtaattt 530  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  24051247 tttttttaggcttaaatatgcaaaccgtccctgtaattt 24051285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 6776604 - 6776661
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||| |||||||||| ||||| |||||||||| |  ||||||||||| ||||||    
T  6776604 agagaatcaaacttgagacatcgaggaggagcacacccccagatcccaagccaatacc 6776661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 12188300 - 12188357
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||||||||||| |||| ||| ||||||||||||  || |||||||| ||||||    
T  12188300 agagaatcgaacttgaaaccttgaggaggagcacactcccaggtcccaagccaatacc 12188357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 12234504 - 12234541
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactc 62  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  12234504 agagaatcgaacctgagacctcgagagggagcacactc 12234541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 13227155 - 13227192
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactc 62  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  13227155 agagaatcgaacttgagacttcgaggaggagcacactc 13227192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 28841493 - 28841456
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactc 62  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  28841493 agagaatcgaacttgagaccttgaggaggagcacactc 28841456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 32201886 - 32201939
Alignment:
Q  29 aatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||||||| || |  || ||||||||||||||||||||||||| ||||||    
T  32201886 aatcgaacttgaaacttaaaggaggagcacactctgagatcccaagccaatacc 32201939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 497 - 569
Target Start/End: Complemental strand, 1258502 - 1258430
Alignment:
Q  497 taaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtt 569  Q
    ||||| ||||||||| ||| |||||||||||||| |||  ||||||   ||||||| ||||||||| ||||||    
T  1258502 taaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtccctgtatctttttttgtt 1258430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 498 - 530
Target Start/End: Original strand, 6159752 - 6159784
Alignment:
Q  498 aaggtttaaatatgcaaaccgtccctgtaattt 530  Q
    |||| ||||||||||||||||||||||||||||    
T  6159752 aaggcttaaatatgcaaaccgtccctgtaattt 6159784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 498 - 562
Target Start/End: Complemental strand, 7678708 - 7678644
Alignment:
Q  498 aaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatcttt 562  Q
    |||| ||||||||| ||| |||||||||||||| |||  |||||||  || ||||||||||||||    
T  7678708 aaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttgctttttgtccttgtatcttt 7678644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 362 - 414
Target Start/End: Complemental strand, 13149446 - 13149394
Alignment:
Q  362 caaatgaattaaaccacaatcaccaaaagtgtctccctgttttaaatctaaat 414  Q
    |||||||| ||| ||| ||||||||||||| ||||| |||||||||| |||||    
T  13149446 caaatgaactaagccataatcaccaaaagtttctccttgttttaaatataaat 13149394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 503 - 628
Target Start/End: Original strand, 52947350 - 52947475
Alignment:
Q  503 ttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtttcaaacctctccttgtatgcttttttcgttttg 602  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||| |||||||||||||||    
T  52947350 ttaaatatgcaaaccgtctctgtaattttgcgcatttttgcaattcgtccatgtatctttttttgtttcaaaactctccttgtaagcttttttcgttttg 52947449  T
Q  603 aaaatggtgtttcccgttaactcccg 628  Q
     ||||| |  ||||||||||||||||    
T  52947450 caaatgattcttcccgttaactcccg 52947475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 506 - 574
Target Start/End: Original strand, 46651367 - 46651435
Alignment:
Q  506 aatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtttcaaa 574  Q
    |||||||||| |||||||||||||| |||  ||||||||| |||||| ||||||||| |||||||||||    
T  46651367 aatatgcaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaa 46651435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 503 - 574
Target Start/End: Complemental strand, 46652837 - 46652766
Alignment:
Q  503 ttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtttcaaa 574  Q
    ||||||||| ||| |||||||||||||| |||  ||||||||| |||||| ||||||||| |||||||||||    
T  46652837 ttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaa 46652766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 488 - 569
Target Start/End: Original strand, 33257869 - 33257950
Alignment:
Q  488 ataattttttaaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtt 569  Q
    |||||||||||||| ||||||||| ||| |||||||||||||| |||  ||||||   || |||||||||||||| ||||||    
T  33257869 ataattttttaaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggtttttgtccttgtatctttttttgtt 33257950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 488 - 569
Target Start/End: Original strand, 33278041 - 33278122
Alignment:
Q  488 ataattttttaaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtt 569  Q
    |||||||||||||| ||||||||| ||| |||||||||||||| |||  ||||||   || |||||||||||||| ||||||    
T  33278041 ataattttttaaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggtttttgtccttgtatctttttttgtt 33278122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 15786309 - 15786373
Alignment:
Q  17 gacatcaaagagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatac 81  Q
    |||| ||||||||||||||| |||||||| ||| ||||||||||||  ||||||||||| |||||    
T  15786309 gacaccaaagagaatcgaacctgagaccttgaggaggagcacactcccagatcccaagccaatac 15786373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 12587349 - 12587300
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaag 74  Q
    |||||||||||| |||||||||||| ||||||||||||  ||||||||||    
T  12587349 agagaatcgaacctgagacctcgaggaggagcacactcacagatcccaag 12587300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 17745253 - 17745310
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||||||| |||||||||||| |||||||||| || || |||||||| ||||||    
T  17745253 agagaatcgaacatgagacctcgaggaggagcacacgctcaggtcccaagccaatacc 17745310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 19528325 - 19528381
Alignment:
Q  26 gagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    ||||||||||| |||||||| ||| ||||||||||||  ||||||||||| ||||||    
T  19528325 gagaatcgaacctgagaccttgaggaggagcacactcatagatcccaagccaatacc 19528381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 7219910 - 7219953
Alignment:
Q  20 atcaaagagaatcgaacttgagacctcgagaaggagcacactct 63  Q
    ||||||||||||||||| |||||| ||||| |||||||||||||    
T  7219910 atcaaagagaatcgaacctgagacttcgaggaggagcacactct 7219953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 498 - 569
Target Start/End: Complemental strand, 16673317 - 16673246
Alignment:
Q  498 aaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtt 569  Q
    |||| ||||||||| ||| ||||||||||||||||||  ||||||   ||||||| ||||||||| ||||||    
T  16673317 aaggcttaaatatgtaaatcgtccctgtaattttgcgtgtttttggttttcgtccctgtatctttttttgtt 16673246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 530
Target Start/End: Complemental strand, 10771724 - 10771694
Alignment:
Q  500 ggtttaaatatgcaaaccgtccctgtaattt 530  Q
    |||||||||||||||||||||||||||||||    
T  10771724 ggtttaaatatgcaaaccgtccctgtaattt 10771694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 12259338 - 12259284
Alignment:
Q  26 gagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaata 80  Q
    |||||||||||||||||| ||||| ||||||||||||  | |||||||| |||||    
T  12259338 gagaatcgaacttgagacttcgaggaggagcacactcccaaatcccaagttaata 12259284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 8177179 - 8177236
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||||||| ||| |||| ||| ||||||||||||  ||||||||||| ||||||    
T  8177179 agagaatcgaacctgaaaccttgaggaggagcacactcccagatcccaagccaatacc 8177236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 8904493 - 8904456
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactc 62  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  8904493 agagaatcgaacttgagaccttgaggaggagcacactc 8904456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 18037610 - 18037647
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactc 62  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  18037610 agagaatcgaacttgagatctcgaaaaggagcacactc 18037647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 33700770 - 33700827
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||||||| |||||||| ||| ||||||||||||  |||| |||||| ||||||    
T  33700770 agagaatcgaacctgagaccttgaggaggagcacactcccagattccaagccaatacc 33700827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 530
Target Start/End: Original strand, 44503185 - 44503218
Alignment:
Q  497 taaggtttaaatatgcaaaccgtccctgtaattt 530  Q
    ||||||||||||||||||||||||| ||||||||    
T  44503185 taaggtttaaatatgcaaaccgtccttgtaattt 44503218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 44961844 - 44961787
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||||||| |||||||  ||| ||||||||||||| | ||| ||||||||||||    
T  44961844 agagaatcgaacctgagaccctgaggaggagcacactcttaaatctcaagctaatacc 44961787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 51814573 - 51814524
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaag 74  Q
    |||||||||||| |||||||| ||| ||||||||||||| ||||| ||||    
T  51814573 agagaatcgaacctgagaccttgaggaggagcacactctcagatctcaag 51814524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 3334845 - 3334798
Alignment:
Q  27 agaatcgaacttgagacctcgagaaggagcacactctgagatcccaagc 75  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||| |||||    
T  3334845 agaatcgaacttgagaccttgagaa-gagcacactctaagatctcaagc 3334798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 498 - 530
Target Start/End: Original strand, 4029546 - 4029578
Alignment:
Q  498 aaggtttaaatatgcaaaccgtccctgtaattt 530  Q
    ||||||||||||||||| |||||||||||||||    
T  4029546 aaggtttaaatatgcaatccgtccctgtaattt 4029578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 17410309 - 17410253
Alignment:
Q  26 gagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    ||||||||||||||||| |||||| |||| |||||||  ||||||||| | ||||||    
T  17410309 gagaatcgaacttgagatctcgaggaggaccacactcccagatcccaaaccaatacc 17410253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 24047100 - 24047136
Alignment:
Q  26 gagaatcgaacttgagacctcgagaaggagcacactc 62  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  24047100 gagaatcgaacttgaaacctcgaggaggagcacactc 24047136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 498 - 542
Target Start/End: Original strand, 28251929 - 28251973
Alignment:
Q  498 aaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttg 542  Q
    |||| |||||||||||||  ||||||||||||| |||||||||||    
T  28251929 aaggcttaaatatgcaaaaggtccctgtaatttagcgcatttttg 28251973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 50901661 - 50901625
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacact 61  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  50901661 agagaatcgaatttgagacctcgaggaggagcacact 50901625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 52029935 - 52029971
Alignment:
Q  26 gagaatcgaacttgagacctcgagaaggagcacactc 62  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  52029935 gagaatcgaacctgagaccttgagaaggagcacactc 52029971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 498 - 628
Target Start/End: Original strand, 35480 - 35613
Alignment:
Q  498 aaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtat--ctttatttgtttcaaacctctccttgtatg-cttttt 594  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||   ||| ||||||||||| ||||||||||| | ||||||    
T  35480 aaggcttaaatatgcaaaccgtccctgtaatttcgcgcatttttgcaattcgtccctgtattcttttttttgtttcaaaactctccttgtaagtcttttt 35579  T
Q  595 tcgttttgaaaatggtgtttcccgttaactcccg 628  Q
    |||||||| |||||||  ||||||||||||||||    
T  35580 tcgttttgcaaatggtcattcccgttaactcccg 35613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 498 - 574
Target Start/End: Complemental strand, 8392864 - 8392788
Alignment:
Q  498 aaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtttcaaa 574  Q
    ||||||| ||||||||||||||||||||||||| |||  ||||||||| |||||| ||||||||| |||||||||||    
T  8392864 aaggttttaatatgcaaaccgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaa 8392788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 498 - 574
Target Start/End: Original strand, 8391399 - 8391475
Alignment:
Q  498 aaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtttcaaa 574  Q
    |||| ||||||||| ||| |||||||||||||| |||  ||||||||| |||||||||||||||| |||||||||||    
T  8391399 aaggcttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccttgtatctttttttgtttcaaa 8391475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 498 - 574
Target Start/End: Original strand, 45981405 - 45981481
Alignment:
Q  498 aaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtttcaaa 574  Q
    |||| ||||||||| ||| ||||| |||||||| |||  ||||||||| |||||||||||||||| |||||||||||    
T  45981405 aaggcttaaatatgtaaaacgtccttgtaatttcgcgtgtttttgcaaatcgtccttgtatctttttttgtttcaaa 45981481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 21960630 - 21960573
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||||||  |||||||||||| ||||||||||||| || |||||||| ||||||    
T  21960630 agagaatcgaatctgagacctcgaggaggagcacactctcaggtcccaagccaatacc 21960573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 30311388 - 30311335
Alignment:
Q  22 caaagagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagc 75  Q
    ||||||||||||||| |||||||| ||| ||||||||||||  |||||||||||    
T  30311388 caaagagaatcgaacctgagaccttgaggaggagcacactcccagatcccaagc 30311335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 51903875 - 51903932
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||||||| ||||||| |||| ||||||||||||  ||||||||||| ||||||    
T  51903875 agagaatcgaacctgagaccacgaggaggagcacactcccagatcccaagccaatacc 51903932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 40063698 - 40063642
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatac 81  Q
    |||||||||||||||||||||  || ||||||| ||||| ||||||||||| |||||    
T  40063698 agagaatcgaacttgagaccttaaggaggagcatactctcagatcccaagccaatac 40063642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 506 - 574
Target Start/End: Complemental strand, 45982852 - 45982784
Alignment:
Q  506 aatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtttcaaa 574  Q
    |||||||||| |||||||||||||| ||   ||||||||| || ||| ||||||||| |||||||||||    
T  45982852 aatatgcaaatcgtccctgtaatttcgcatgtttttgcaaatcatccctgtatctttttttgtttcaaa 45982784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 47454615 - 47454671
Alignment:
Q  26 gagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    ||||||||||| |||||||||||| ||||||||||||  ||||| ||||| ||||||    
T  47454615 gagaatcgaacctgagacctcgaggaggagcacactccaagatctcaagccaatacc 47454671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 530
Target Start/End: Complemental strand, 3990905 - 3990874
Alignment:
Q  499 aggtttaaatatgcaaaccgtccctgtaattt 530  Q
    ||||||||||||||||||||||||||||||||    
T  3990905 aggtttaaatatgcaaaccgtccctgtaattt 3990874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 9557394 - 9557343
Alignment:
Q  30 atcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatac 81  Q
    ||||||| ||||| |||||| ||||||||||||| ||||||||||| |||||    
T  9557394 atcgaacctgagatctcgaggaggagcacactctcagatcccaagccaatac 9557343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 28703401 - 28703456
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaata 80  Q
    |||||||||||| |||||||| ||  ||||||||||||  ||||||||||||||||    
T  28703401 agagaatcgaacctgagaccttgaagaggagcacactcccagatcccaagctaata 28703456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 10445136 - 10445186
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagc 75  Q
    |||||||||||| |||||||||||| ||||||||||||  || ||||||||    
T  10445136 agagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagc 10445186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 19154718 - 19154672
Alignment:
Q  17 gacatcaaagagaatcgaacttgagacctcgagaaggagcacactct 63  Q
    |||||||||||||||||||| ||||||||  || |||||||||||||    
T  19154718 gacatcaaagagaatcgaacctgagacctttaggaggagcacactct 19154672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 530
Target Start/End: Complemental strand, 26052235 - 26052205
Alignment:
Q  500 ggtttaaatatgcaaaccgtccctgtaattt 530  Q
    |||||||||||||||||||||||||||||||    
T  26052235 ggtttaaatatgcaaaccgtccctgtaattt 26052205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 30510196 - 30510246
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagc 75  Q
    |||||||||||| |||||||||||||||||||| ||||  || ||||||||    
T  30510196 agagaatcgaacctgagacctcgagaaggagcatactcctaggtcccaagc 30510246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 44743856 - 44743902
Alignment:
Q  29 aatcgaacttgagacctcgagaaggagcacactctgagatcccaagc 75  Q
    |||||||| |||||||||||| ||||||||||||  |||||||||||    
T  44743856 aatcgaacctgagacctcgaggaggagcacactcccagatcccaagc 44743902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 530
Target Start/End: Original strand, 54600133 - 54600163
Alignment:
Q  500 ggtttaaatatgcaaaccgtccctgtaattt 530  Q
    |||||||||||||||||||||||||||||||    
T  54600133 ggtttaaatatgcaaaccgtccctgtaattt 54600163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 2667937 - 2667884
Alignment:
Q  29 aatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||| |||||||||||| | ||||||||||  ||||||||||| ||||||    
T  2667937 aatcgaacctgagacctcgaggaagagcacactcccagatcccaagccaatacc 2667884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 4844508 - 4844557
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaag 74  Q
    |||||||||| | |||||||||||| ||||||||||||  ||||||||||    
T  4844508 agagaatcgatcctgagacctcgaggaggagcacactcccagatcccaag 4844557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 4870204 - 4870253
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaag 74  Q
    |||||||||| | |||||||||||| ||||||||||||  ||||||||||    
T  4870204 agagaatcgatcctgagacctcgaggaggagcacactcccagatcccaag 4870253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 33899701 - 33899656
Alignment:
Q  17 gacatcaaagagaatcgaacttgagacctcgagaaggagcacactc 62  Q
    |||| ||||||||||||||| |||||||| ||| ||||||||||||    
T  33899701 gacaccaaagagaatcgaacctgagacctagaggaggagcacactc 33899656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 36720460 - 36720403
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||||||| ||| |||||||| ||||||||||||  | ||||||||| ||||||    
T  36720460 agagaatcgaacctgaaacctcgaggaggagcacactcccatatcccaagccaatacc 36720403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 39976433 - 39976466
Alignment:
Q  30 atcgaacttgagacctcgagaaggagcacactct 63  Q
    |||||||||||||||| |||||||||||||||||    
T  39976433 atcgaacttgagaccttgagaaggagcacactct 39976466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 498 - 530
Target Start/End: Complemental strand, 25166807 - 25166775
Alignment:
Q  498 aaggtttaaatatgcaaaccgtccctgtaattt 530  Q
    |||| ||||||||||||||||||||||||||||    
T  25166807 aaggcttaaatatgcaaaccgtccctgtaattt 25166775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 52769978 - 52770026
Alignment:
Q  23 aaagagaatcgaacttgagacctcgagaaggagcacactctgagatccc 71  Q
    |||||||||||||| ||||||||| || ||||||||||||  |||||||    
T  52769978 aaagagaatcgaacctgagacctcaaggaggagcacactcccagatccc 52770026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 506 - 574
Target Start/End: Complemental strand, 42776871 - 42776803
Alignment:
Q  506 aatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtttcaaa 574  Q
    ||||||||||||||||||||||||| |||  ||||||||| |||||| ||||||||| |||||||||||    
T  42776871 aatatgcaaaccgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaa 42776803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 503 - 574
Target Start/End: Original strand, 42775423 - 42775494
Alignment:
Q  503 ttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtttcaaa 574  Q
    ||||||||| ||| ||| |||||||||| |||  ||||||||| |||||||||||||||| |||||||||||    
T  42775423 ttaaatatgtaaaacgttcctgtaatttcgcgtgtttttgcaaatcgtccttgtatctttttttgtttcaaa 42775494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 84902 - 84853
Alignment:
Q  26 gagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagc 75  Q
    |||||||||||||||||||| ||| ||||||||||||  |||||||||||    
T  84902 gagaatcgaacttgagaccttgaggaggagcacactcccagatcccaagc 84853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 27596406 - 27596349
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||||||  | |||||||||| ||||| ||||||| ||||||||||||||||||    
T  27596406 agagaatcgaatctaagacctcgaggaggaggacactctcagatcccaagctaatacc 27596349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 29075860 - 29075803
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||||||| ||||| |||||| ||||||||||||  ||||||||||| ||||||    
T  29075860 agagaatcgaacatgagatctcgaggaggagcacactcccagatcccaagccaatacc 29075803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 37258363 - 37258420
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||||||| ||| |||| ||| ||||||||||||  ||||||||||||||||||    
T  37258363 agagaatcgaacctgaaaccttgaggaggagcacactcctagatcccaagctaatacc 37258420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 16773892 - 16773849
Alignment:
Q  19 catcaaagagaatcgaacttgagacctcgagaaggagcacactc 62  Q
    ||||| |||||||||||| |||||||||||| ||||||||||||    
T  16773892 catcagagagaatcgaacctgagacctcgaggaggagcacactc 16773849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 9985231 - 9985277
Alignment:
Q  27 agaatcgaacttgagacctcgagaaggagcacactctgagatcccaa 73  Q
    ||||||||||||||||||| ||| |||| |||||||| |||||||||    
T  9985231 agaatcgaacttgagaccttgagtaggaacacactctcagatcccaa 9985277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 530
Target Start/End: Complemental strand, 35989641 - 35989611
Alignment:
Q  500 ggtttaaatatgcaaaccgtccctgtaattt 530  Q
    |||||||||||||||||||||||||||||||    
T  35989641 ggtttaaatatgcaaaccgtccctgtaattt 35989611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 41165627 - 41165681
Alignment:
Q  26 gagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaata 80  Q
    ||||||||||  | |||| ||||||||||||||||||  ||||||||||||||||    
T  41165627 gagaatcgaatctaagacttcgagaaggagcacactcccagatcccaagctaata 41165681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 12883919 - 12883862
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    ||||||| |||| ||||||||| || ||||||||||||  ||||||||| ||||||||    
T  12883919 agagaattgaacatgagacctcaaggaggagcacactcccagatcccaacctaatacc 12883862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 22020859 - 22020916
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||||||  |||||| || || ||||||||||||  ||||||||||||||||||    
T  22020859 agagaatcgaatctgagacttcaaggaggagcacactcccagatcccaagctaatacc 22020916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 530
Target Start/End: Complemental strand, 23912250 - 23912221
Alignment:
Q  501 gtttaaatatgcaaaccgtccctgtaattt 530  Q
    ||||||||||||||||||||||||||||||    
T  23912250 gtttaaatatgcaaaccgtccctgtaattt 23912221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 530
Target Start/End: Complemental strand, 31024391 - 31024354
Alignment:
Q  493 tttttaaggtttaaatatgcaaaccgtccctgtaattt 530  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  31024391 ttttttaggattaaatatgcaaaccgtccctgtaattt 31024354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 30883196 - 30883252
Alignment:
Q  26 gagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||| ||||||||||||| ||| ||||||||||||  || |||||||| ||||||    
T  30883196 gagaattgaacttgagaccttgaggaggagcacactcccaggtcccaagccaatacc 30883252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 498 - 530
Target Start/End: Original strand, 35988853 - 35988885
Alignment:
Q  498 aaggtttaaatatgcaaaccgtccctgtaattt 530  Q
    |||| ||||||||||||||||||||||||||||    
T  35988853 aaggcttaaatatgcaaaccgtccctgtaattt 35988885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 506 - 572
Target Start/End: Complemental strand, 9122 - 9056
Alignment:
Q  506 aatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtttca 572  Q
    |||||||||| ||||||||||||||||||  ||||||||| |||||| ||||||||| |||||||||    
T  9122 aatatgcaaaacgtccctgtaattttgcgtgtttttgcaaatcgtccctgtatctttttttgtttca 9056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 500 - 574
Target Start/End: Original strand, 7698 - 7772
Alignment:
Q  500 ggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtttcaaa 574  Q
    |||||||||||| ||| |||||||||||||| |||  ||||||||| |||||| ||||||||| ||| |||||||    
T  7698 ggtttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttatttcaaa 7772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 26545920 - 26545862
Alignment:
Q  24 aagagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    ||||||||| ||||||||||||||||||||||||||||   ||||||||||||||||||    
T  26545920 aagagaatcaaacttgagacctcgagaaggagcacacttccagatcccaagctaatacc 26545862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 503 - 574
Target Start/End: Original strand, 20587042 - 20587113
Alignment:
Q  503 ttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtttcaaa 574  Q
    ||||||||| ||| |||||||||||||| |||  ||||||||| |||||| ||||||||| |||||||||||    
T  20587042 ttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaa 20587113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 503 - 574
Target Start/End: Complemental strand, 20588515 - 20588444
Alignment:
Q  503 ttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtttcaaa 574  Q
    ||||||||| ||| |||||||||||||| |||  ||||||||| |||||  ||||||||| |||||||||||    
T  20588515 ttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtctctgtatctttttttgtttcaaa 20588444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 40791488 - 40791538
Alignment:
Q  26 gagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagct 76  Q
    |||||||||||||||||||| ||||||||||||||||| | ||| ||||||    
T  40791488 gagaatcgaacttgagaccttgagaaggagcacactctcaaatctcaagct 40791538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 25637230 - 25637182
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaa 73  Q
    |||||| ||||| |||||||||||||||||||||||||  |||||||||    
T  25637230 agagaaccgaacctgagacctcgagaaggagcacactcccagatcccaa 25637182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 37480153 - 37480097
Alignment:
Q  26 gagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    ||||||||||| |||||||| ||| ||||||||||||| || |||||||| ||||||    
T  37480153 gagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaatacc 37480097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 4438978 - 4439033
Alignment:
Q  27 agaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||||| || ||||| ||| ||||||||||||| |||||||||| |||||||    
T  4438978 agaatcgaacatgcgaccttgaggaggagcacactctcagatcccaagttaatacc 4439033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 42327391 - 42327449
Alignment:
Q  24 aagagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    ||||||||||||| |||||||| ||| ||||||||||||  || |||||||| ||||||    
T  42327391 aagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaatacc 42327449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 42860424 - 42860390
Alignment:
Q  28 gaatcgaacttgagacctcgagaaggagcacactc 62  Q
    |||||||||||||||||||||| ||||||||||||    
T  42860424 gaatcgaacttgagacctcgaggaggagcacactc 42860390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 3677350 - 3677407
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||||||||| |||||||||| || |||| ||||| |||||| |||| ||||||    
T  3677350 agagaatcgaacttaagacctcgaggagaagcatactcttagatcctaagccaatacc 3677407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 8162062 - 8162119
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||| ||||||||||||| || |||| |||| ||| || |||||||||||||||    
T  8162062 agagaatccaacttgagacctcaaggaggaacacattctcaggtcccaagctaatacc 8162119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 498 - 530
Target Start/End: Complemental strand, 2238883 - 2238851
Alignment:
Q  498 aaggtttaaatatgcaaaccgtccctgtaattt 530  Q
    |||| ||||||||||||||||||||||||||||    
T  2238883 aaggcttaaatatgcaaaccgtccctgtaattt 2238851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 498 - 530
Target Start/End: Complemental strand, 3150285 - 3150253
Alignment:
Q  498 aaggtttaaatatgcaaaccgtccctgtaattt 530  Q
    ||||| |||||||||||||||||||||||||||    
T  3150285 aaggtataaatatgcaaaccgtccctgtaattt 3150253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 497 - 541
Target Start/End: Complemental strand, 10345209 - 10345165
Alignment:
Q  497 taaggtttaaatatgcaaaccgtccctgtaattttgcgcattttt 541  Q
    ||||||||||||||| |||   |||||||||||||||||||||||    
T  10345209 taaggtttaaatatgtaaatgatccctgtaattttgcgcattttt 10345165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 19016109 - 19016073
Alignment:
Q  26 gagaatcgaacttgagacctcgagaaggagcacactc 62  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  19016109 gagaatcaaacttgagacctcgaggaggagcacactc 19016073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 498 - 530
Target Start/End: Original strand, 21716438 - 21716470
Alignment:
Q  498 aaggtttaaatatgcaaaccgtccctgtaattt 530  Q
    |||| ||||||||||||||||||||||||||||    
T  21716438 aaggcttaaatatgcaaaccgtccctgtaattt 21716470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 498 - 530
Target Start/End: Complemental strand, 21720259 - 21720227
Alignment:
Q  498 aaggtttaaatatgcaaaccgtccctgtaattt 530  Q
    |||| ||||||||||||||||||||||||||||    
T  21720259 aaggcttaaatatgcaaaccgtccctgtaattt 21720227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 498 - 562
Target Start/End: Original strand, 28563374 - 28563438
Alignment:
Q  498 aaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatcttt 562  Q
    |||| ||||||||| ||| |||||||||||||| |||  ||||||   |||||||||||||||||    
T  28563374 aaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtccttgtatcttt 28563438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 31573630 - 31573682
Alignment:
Q  17 gacatcaaagagaatcgaacttgagacctcgagaaggagcacactctgagatc 69  Q
    |||||| ||||||||||||| |||||| || || ||||||||||||| |||||    
T  31573630 gacatcgaagagaatcgaacctgagacatcaaggaggagcacactctcagatc 31573682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 33582052 - 33582004
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaa 73  Q
    |||||||||||| ||||||||| || ||||||||||||| || ||||||    
T  33582052 agagaatcgaacctgagacctcaaggaggagcacactctcaggtcccaa 33582004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 39715070 - 39715034
Alignment:
Q  26 gagaatcgaacttgagacctcgagaaggagcacactc 62  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  39715070 gagaatcgaacctgagacctcgaggaggagcacactc 39715034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 497 - 574
Target Start/End: Original strand, 35505519 - 35505596
Alignment:
Q  497 taaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtttcaaa 574  Q
    |||||||| |||||||||| |||||||||||||| |||  |||||| || |||||| ||||||||| |||||||||||    
T  35505519 taaggttttaatatgcaaaacgtccctgtaatttcgcgtgtttttgtaaatcgtccatgtatctttttttgtttcaaa 35505596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 5801121 - 5801069
Alignment:
Q  30 atcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||||||||| |||||| |||||||||||  ||||||||||||||||||    
T  5801121 atcgaacttgagacgtcgagacggagcacactcctagatcccaagctaatacc 5801069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 11492069 - 11492127
Alignment:
Q  24 aagagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    ||||||||||||| | |||||||||||||||||||||||  ||||| ||||| ||||||    
T  11492069 aagagaatcgaacctaagacctcgagaaggagcacactcccagatctcaagccaatacc 11492127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 968441 - 968384
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||||||| |||||||||||| ||||||||||||  || |||||||| ||||||    
T  968441 agagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaatacc 968384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 498 - 530
Target Start/End: Original strand, 9898962 - 9898994
Alignment:
Q  498 aaggtttaaatatgcaaaccgtccctgtaattt 530  Q
    |||||||||||||||||||||||||||||||||    
T  9898962 aaggtttaaatatgcaaaccgtccctgtaattt 9898994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 16852418 - 16852362
Alignment:
Q  26 gagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    ||||||||||| |||||||||||| ||||||||||||  || |||||||| ||||||    
T  16852418 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaatacc 16852362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 19703485 - 19703541
Alignment:
Q  26 gagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    ||||||||||| |||||||| ||| ||||||||||||| || |||||||| ||||||    
T  19703485 gagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaatacc 19703541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 503 - 570
Target Start/End: Original strand, 25264343 - 25264410
Alignment:
Q  503 ttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgttt 570  Q
    ||||||||| ||| |||||||||||||| |||  ||||||   ||||||||||||||||| |||||||    
T  25264343 ttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtccttgtatctttttttgttt 25264410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 530
Target Start/End: Complemental strand, 26636318 - 26636288
Alignment:
Q  500 ggtttaaatatgcaaaccgtccctgtaattt 530  Q
    |||||||||||||||||||||||||||||||    
T  26636318 ggtttaaatatgcaaaccgtccctgtaattt 26636288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 24675502 - 24675555
Alignment:
Q  18 acatcaaagagaatcgaacttgagacctcgagaaggagcacactctgagatccc 71  Q
    |||||| ||| |||||||  |||||||| ||||||||||||||||| |||||||    
T  24675502 acatcagagaaaatcgaatctgagaccttgagaaggagcacactctcagatccc 24675555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 530
Target Start/End: Complemental strand, 37587429 - 37587396
Alignment:
Q  497 taaggtttaaatatgcaaaccgtccctgtaattt 530  Q
    |||||||||||||||||||| |||||||||||||    
T  37587429 taaggtttaaatatgcaaactgtccctgtaattt 37587396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 498 - 530
Target Start/End: Complemental strand, 23154370 - 23154338
Alignment:
Q  498 aaggtttaaatatgcaaaccgtccctgtaattt 530  Q
    |||| ||||||||||||||||||||||||||||    
T  23154370 aaggcttaaatatgcaaaccgtccctgtaattt 23154338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 28566186 - 28566127
Alignment:
Q  22 caaagagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    ||||||||||||||| |||| ||| ||||||||||||||||| || |||||| | ||||||    
T  28566186 caaagagaatcgaacatgag-ccttgagaaggagcacactctaaggtcccaaaccaatacc 28566127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 28573809 - 28573750
Alignment:
Q  22 caaagagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    ||||||||||||||| |||| ||| ||||||||||||||||| || |||||| | ||||||    
T  28573809 caaagagaatcgaacatgag-ccttgagaaggagcacactctaaggtcccaaaccaatacc 28573750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 45709709 - 45709762
Alignment:
Q  29 aatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||||||||||||    
T  45709709 aatcgaacctgagacctcgaggaggagcacactctcagatcccaagctaatacc 45709762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 498 - 574
Target Start/End: Original strand, 25008090 - 25008166
Alignment:
Q  498 aaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtttcaaa 574  Q
    |||| ||||||||| ||| |||||||||||||| |||  ||||||||| |||||| ||||||||| |||||||||||    
T  25008090 aaggcttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaa 25008166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 506 - 574
Target Start/End: Original strand, 43545348 - 43545416
Alignment:
Q  506 aatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtttcaaa 574  Q
    |||||||||| |||||||||||||| |||  ||||||||| |||||| ||||||||| |||||||||||    
T  43545348 aatatgcaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaa 43545416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 506 - 574
Target Start/End: Complemental strand, 25009538 - 25009470
Alignment:
Q  506 aatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtttcaaa 574  Q
    |||||| ||| |||||||||||||| |||  ||||||||| |||||| ||||||||| |||||||||||    
T  25009538 aatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaa 25009470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 506 - 574
Target Start/End: Complemental strand, 28850021 - 28849953
Alignment:
Q  506 aatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtttcaaa 574  Q
    |||||||||| ||||||||||| || |||  ||||||||| |||||| ||||||||| |||||||||||    
T  28850021 aatatgcaaaacgtccctgtaacttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaa 28849953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 503 - 574
Target Start/End: Original strand, 28848561 - 28848631
Alignment:
Q  503 ttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtttcaaa 574  Q
    ||||||||| ||| |||||||||||||| |||  ||||||||| |||||| ||||||||| |||||||||||    
T  28848561 ttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatcttt-tttgtttcaaa 28848631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 494 - 569
Target Start/End: Complemental strand, 31393724 - 31393649
Alignment:
Q  494 ttttaaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtt 569  Q
    |||||||| ||||||||| ||| |||||||||||||| |||  ||||||   ||||||||||||||||| ||||||    
T  31393724 ttttaaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtccttgtatctttttttgtt 31393649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 7309435 - 7309377
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacact-ctgagatcccaagctaatacc 82  Q
    ||||||||||||||||||||||||| ||||||||||| |  ||| ||||||||||||||    
T  7309435 agagaatcgaacttgagacctcgaggaggagcacactccccagaccccaagctaatacc 7309377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 3175006 - 3174957
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaag 74  Q
    |||||||||||| ||||||||||||| |||||||||||  ||||||||||    
T  3175006 agagaatcgaacctgagacctcgagatggagcacactcccagatcccaag 3174957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 496 - 569
Target Start/End: Original strand, 40028453 - 40028526
Alignment:
Q  496 ttaaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtt 569  Q
    |||||||||||||||| ||| |||||||||||||| |||  ||||||   ||||||| ||||||||| ||||||    
T  40028453 ttaaggtttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtccctgtatctttttttgtt 40028526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 43215263 - 43215206
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||||||| |||||||| ||| |||||||||||| ||| |||||||| ||||||    
T  43215263 agagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaatacc 43215206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 26703196 - 26703149
Alignment:
Q  33 gaacttgagacctcgagaaggagcacactctgagatcccaagctaata 80  Q
    |||| |||||||||||||||||||||||||  ||||||||||| ||||    
T  26703196 gaacctgagacctcgagaaggagcacactcccagatcccaagccaata 26703149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 503 - 570
Target Start/End: Complemental strand, 43546786 - 43546719
Alignment:
Q  503 ttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgttt 570  Q
    ||||||||| ||| |||||||||||||| |||  ||||||||| |||||| ||||| ||| |||||||    
T  43546786 ttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatttttttttgttt 43546719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 49050489 - 49050544
Alignment:
Q  26 gagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatac 81  Q
    ||||||||||| ||||||||| || ||||| ||||||  |||||||||||||||||    
T  49050489 gagaatcgaacctgagacctcaaggaggagtacactcgcagatcccaagctaatac 49050544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 29916806 - 29916852
Alignment:
Q  26 gagaatcgaacttgagacctcgagaaggagcacactctgagatccca 72  Q
    ||||||||||| |||||||| ||| ||||||||||||| ||||||||    
T  29916806 gagaatcgaacctgagaccttgaggaggagcacactcttagatccca 29916852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 2446387 - 2446350
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactc 62  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  2446387 agagaatcgaacttgagatctcgaggaggagcacactc 2446350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 20335829 - 20335886
Alignment:
Q  26 gagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacct 83  Q
    ||||||||||| |||||||||||| ||||||||||||  |  |||||||| |||||||    
T  20335829 gagaatcgaacctgagacctcgaggaggagcacactcccaagtcccaagccaatacct 20335886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 23552197 - 23552160
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactc 62  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  23552197 agagaatcgaacttgagaccttgaggaggagcacactc 23552160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 530
Target Start/End: Original strand, 23966312 - 23966345
Alignment:
Q  497 taaggtttaaatatgcaaaccgtccctgtaattt 530  Q
    ||||| ||||||||||||||||||||||||||||    
T  23966312 taaggcttaaatatgcaaaccgtccctgtaattt 23966345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 26459407 - 26459464
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||||||| |||||||| ||| ||||||||||||  || |||||||| ||||||    
T  26459407 agagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaatacc 26459464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 30217959 - 30217922
Alignment:
Q  24 aagagaatcgaacttgagacctcgagaaggagcacact 61  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  30217959 aagagaatcgaacttgagaccttgaggaggagcacact 30217922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 37162347 - 37162384
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactc 62  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  37162347 agagaatcgaacttgagaccttgagaagaagcacactc 37162384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 530
Target Start/End: Complemental strand, 43901656 - 43901623
Alignment:
Q  497 taaggtttaaatatgcaaaccgtccctgtaattt 530  Q
    ||||||||||||||||||||||| ||||||||||    
T  43901656 taaggtttaaatatgcaaaccgttcctgtaattt 43901623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 48772013 - 48771960
Alignment:
Q  29 aatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||| ||||||||| || ||||||||||||  ||||||||||| ||||||    
T  48772013 aatcgaacctgagacctcaaggaggagcacactcccagatcccaagccaatacc 48771960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 570
Target Start/End: Original strand, 21715066 - 21715142
Alignment:
Q  494 ttttaaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgttt 570  Q
    |||| ||| ||||||||| ||| |||||||||||||| |||  ||||||   ||||||| ||||||||| |||||||    
T  21715066 tttttaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttgattttcgtccctgtatctttttttgttt 21715142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 530
Target Start/End: Complemental strand, 26776640 - 26776604
Alignment:
Q  494 ttttaaggtttaaatatgcaaaccgtccctgtaattt 530  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  26776640 ttttatggtttaaatatgcaaaccgtccctttaattt 26776604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1889 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold1889
Description:

Target: scaffold1889; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 143 - 270
Target Start/End: Original strand, 262 - 394
Alignment:
Q  143 aagtaatgattatagtttgaatgtttatttatgatgtgttcc-gtatgcataaaatgaacctt------aaatattgcatattgattcctaaatcaattt 235  Q
    |||||||||||||| |||||||||| ||||  ||||| |||  ||||| ||||||| ||||||      ||||  |||||||||||||||||||||||||    
T  262 aagtaatgattataatttgaatgttgattt--gatgttttcttgtatgtataaaattaacctttgttataaattgtgcatattgattcctaaatcaattt 359  T
Q  236 aattaccggtgtactagatccattaagaagttgaa 270  Q
    |||||||  |||| ||||||||||| ||| |||||    
T  360 aattaccaatgtaatagatccattaggaaattgaa 394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 506 - 574
Target Start/End: Original strand, 39927939 - 39928007
Alignment:
Q  506 aatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtttcaaa 574  Q
    |||||||||| |||||||||||||| |||  ||||||||| |||||| ||||||||| |||||||||||    
T  39927939 aatatgcaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaa 39928007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 495 - 574
Target Start/End: Complemental strand, 39929418 - 39929339
Alignment:
Q  495 tttaaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtttcaaa 574  Q
    ||||||| ||||||||| ||| ||||| |||||||| |||  ||||||||| |||||| ||||||||| |||||||||||    
T  39929418 tttaaggcttaaatatgtaaaacgtccatgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaa 39929339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 7949451 - 7949508
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||||||| |||||||| ||| |||||||||||| ||| |||||||| ||||||    
T  7949451 agagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaatacc 7949508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 39509148 - 39509099
Alignment:
Q  26 gagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagc 75  Q
    ||||||||||| |||||||||||| ||||||||||||  |||||||||||    
T  39509148 gagaatcgaacctgagacctcgaggaggagcacactcccagatcccaagc 39509099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 30938217 - 30938273
Alignment:
Q  26 gagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    ||||||||||| |||||||||||| ||||||||||||  ||||||||| | ||||||    
T  30938217 gagaatcgaacctgagacctcgaggaggagcacactccaagatcccaaaccaatacc 30938273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 47044795 - 47044747
Alignment:
Q  26 gagaatcgaacttgagacctcgagaaggagcacactctgagatcccaag 74  Q
    ||||||||||| |||||||||||| ||||||| ||||| ||||||||||    
T  47044795 gagaatcgaacctgagacctcgaggaggagcaaactctcagatcccaag 47044747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 10048065 - 10048002
Alignment:
Q  19 catcaaagagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    ||||| |||||||||||| |||||||  ||||||||||| ||||| || |||||||| ||||||    
T  10048065 catcagagagaatcgaacctgagaccatgagaaggagcatactcttaggtcccaagccaatacc 10048002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 498 - 569
Target Start/End: Original strand, 44251603 - 44251674
Alignment:
Q  498 aaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtt 569  Q
    |||| ||||||||| ||| |||||||||||||| |||  ||||||   ||||||||||||||||| ||||||    
T  44251603 aaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtccttgtatctttttttgtt 44251674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 530
Target Start/End: Complemental strand, 47848887 - 47848856
Alignment:
Q  499 aggtttaaatatgcaaaccgtccctgtaattt 530  Q
    ||||||||||||||||||||||||||||||||    
T  47848887 aggtttaaatatgcaaaccgtccctgtaattt 47848856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 503 - 569
Target Start/End: Original strand, 10337107 - 10337173
Alignment:
Q  503 ttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtt 569  Q
    ||||||||| ||| |||||||||||||| |||  ||||||   ||||||||||||||||| ||||||    
T  10337107 ttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtccttgtatctttttttgtt 10337173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 530
Target Start/End: Complemental strand, 35022511 - 35022481
Alignment:
Q  500 ggtttaaatatgcaaaccgtccctgtaattt 530  Q
    |||||||||||||||||||||||||||||||    
T  35022511 ggtttaaatatgcaaaccgtccctgtaattt 35022481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 38869844 - 38869790
Alignment:
Q  28 gaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    ||||||||| |||||||| ||| ||||||||||||  ||||||||||| ||||||    
T  38869844 gaatcgaacctgagaccttgaggaggagcacactcccagatcccaagccaatacc 38869790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 15729560 - 15729523
Alignment:
Q  26 gagaatcgaacttgagacctcgagaaggagcacactct 63  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  15729560 gagaatcgaacttgagacatcgaggaggagcacactct 15729523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 21775923 - 21775976
Alignment:
Q  29 aatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    ||||||||||||||||| ||| ||||||||||| | |||||| || ||||||||    
T  21775923 aatcgaacttgagaccttgaggaggagcacactttcagatcctaaactaatacc 21775976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 30557259 - 30557304
Alignment:
Q  17 gacatcaaagagaatcgaacttgagacctcgagaaggagcacactc 62  Q
    |||||| ||||||||||||| |||| |||||| |||||||||||||    
T  30557259 gacatcgaagagaatcgaacatgagccctcgaaaaggagcacactc 30557304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 32992690 - 32992641
Alignment:
Q  26 gagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagc 75  Q
    |||||||||||||||||||| ||| ||||||||||||  || ||||||||    
T  32992690 gagaatcgaacttgagaccttgaggaggagcacactccaaggtcccaagc 32992641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 37109348 - 37109405
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||||||| |||||||| ||| ||||||||||||  || |||||||| ||||||    
T  37109348 agagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaatacc 37109405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 569
Target Start/End: Complemental strand, 48713525 - 48713452
Alignment:
Q  496 ttaaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtt 569  Q
    |||||| ||||||||| ||| |||||||||||||| |||  ||||||   ||||||| ||||||||| ||||||    
T  48713525 ttaaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtccctgtatctttttttgtt 48713452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 10338235 - 10338195
Alignment:
Q  494 ttttaaggtttaaatatgcaaaccgtccctgtaattttgcg 534  Q
    |||||||||||||||||| ||| ||||| ||||||||||||    
T  10338235 ttttaaggtttaaatatgtaaatcgtccatgtaattttgcg 10338195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 498 - 530
Target Start/End: Original strand, 15807654 - 15807686
Alignment:
Q  498 aaggtttaaatatgcaaaccgtccctgtaattt 530  Q
    |||| ||||||||||||||||||||||||||||    
T  15807654 aaggcttaaatatgcaaaccgtccctgtaattt 15807686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 31826690 - 31826638
Alignment:
Q  23 aaagagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagc 75  Q
    |||| |||||||||||||||||| ||| ||||||||||||  | |||||||||    
T  31826690 aaagggaatcgaacttgagaccttgaggaggagcacactcgcaaatcccaagc 31826638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 49262682 - 49262738
Alignment:
Q  26 gagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    ||||||||||| ||||||||| | |||||||||||||| |  |||||||| ||||||    
T  49262682 gagaatcgaacctgagacctcaacaaggagcacactctcaagtcccaagcgaatacc 49262738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 55427198 - 55427254
Alignment:
Q  26 gagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    ||||||||||| |||||||||||| ||||||| ||||  || |||||||| ||||||    
T  55427198 gagaatcgaacctgagacctcgagcaggagcagactcccaggtcccaagccaatacc 55427254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 497 - 574
Target Start/End: Original strand, 9017 - 9094
Alignment:
Q  497 taaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtttcaaa 574  Q
    ||||| || |||||||||| ||| |||||||||| |||   |||||||| |||||||||||||||| |||||||||||    
T  9017 taaggctttaatatgcaaaacgttcctgtaatttcgcgtgattttgcaaatcgtccttgtatctttttttgtttcaaa 9094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 497 - 574
Target Start/End: Complemental strand, 8332 - 8255
Alignment:
Q  497 taaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtttcaaa 574  Q
    ||||| || |||||||||| |||||||||||||| |||  ||||||||| |||||| | ||||||| |||||||||||    
T  8332 taaggcttgaatatgcaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctatatctttttttgtttcaaa 8255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 11607 - 11550
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||||||| |||||||||||| ||||||||||||  ||||||||||| ||||||    
T  11607 agagaatcgaacctgagacctcgaggaggagcacactcccagatcccaagccaatacc 11550  T

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Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 503 - 574
Target Start/End: Original strand, 193594 - 193665
Alignment:
Q  503 ttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttatttgtttcaaa 574  Q
    ||||||||| ||| |||| ||||||||| |||  ||||||||| |||||| ||||||||| |||||||||||    
T  193594 ttaaatatgtaaaacgtctctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaa 193665  T

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Target: scaffold0258 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 15320 - 15377
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||||||| |||||||||||| ||||||||||||  || |||||||| ||||||    
T  15320 agagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaatacc 15377  T

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Target: scaffold0118 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 41622 - 41687
Alignment:
Q  17 gacatcaaagagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    ||||||| ||||||| |||| |||||||||||| ||||||| ||||| ||||| ||||| ||||||    
T  41622 gacatcagagagaattgaacctgagacctcgaggaggagcatactctcagatctcaagccaatacc 41687  T

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Target: scaffold0141 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 490 - 530
Target Start/End: Original strand, 10296 - 10336
Alignment:
Q  490 aattttttaaggtttaaatatgcaaaccgtccctgtaattt 530  Q
    |||||||| ||| ||||||||||||||||||||||||||||    
T  10296 aatttttttaggcttaaatatgcaaaccgtccctgtaattt 10336  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 19846 - 19901
Alignment:
Q  27 agaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||||||||||||||| || ||||||| ||||  ||||||||||| ||||||    
T  19846 agaatcgaacttgagacctcaaggaggagcagactcccagatcccaagccaatacc 19901  T

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Target: scaffold1367 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 837 - 894
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||||||| |||||| ||||| ||||||||| ||  ||||||||||| ||||||    
T  837 agagaatcgaacctgagacttcgaggaggagcacattcccagatcccaagccaatacc 894  T

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Target: scaffold0194 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 13043 - 13100
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||||||| |||||||| ||| ||||||||||||  ||||| ||||| ||||||    
T  13043 agagaatcgaacctgagaccttgaggaggagcacactcccagatctcaagccaatacc 13100  T

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Target: scaffold0021 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 106127 - 106070
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||||||||| |||| |||||||| |||||||||   | |||||||||||||||    
T  106127 agagaatcgaactttagacttcgagaagcagcacactccctggtcccaagctaatacc 106070  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 49385 - 49328
Alignment:
Q  25 agagaatcgaacttgagacctcgagaaggagcacactctgagatcccaagctaatacc 82  Q
    |||||||||||| ||| |||||||  ||||||||||||| | ||||||||| ||||||    
T  49385 agagaatcgaacctgatacctcgaagaggagcacactctcaaatcccaagccaatacc 49328  T

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