View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_30 (Length: 429)
Name: NF11557A_low_30
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 22 - 420
Target Start/End: Original strand, 41349983 - 41350381
Alignment:
| Q |
22 |
catgttttccacattctctatcaaaggtggtagataattcattgtgtccattgaaaaagttgttgatattggaggaggtagtgatgactggacttgattc |
121 |
Q |
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| T |
41349983 |
catgttttccacattctctatcaaaggtggtagataattcattgtgtccattgaaaaagttgttgatattggaggaggtagtgatgactggacttgattc |
41350082 |
T |
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| Q |
122 |
catgtttcagagctcaaaccatttatagaatcctggaagtattgatcggtttgcagattacaactgctttctgttgttgttccatgaagtgaatcactag |
221 |
Q |
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| T |
41350083 |
catgtttcagagctcaaaccatttatagaatcttggaagtattgatcggtttgcagattacaactgctttctgttgttgttccatgaagtgaatcactag |
41350182 |
T |
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| Q |
222 |
actcaaacatgaaaatagggcatgtgggagaaaacaaggttgtttctggtggttttgctgttgttatattctcttggttggcaaactggtctaattttat |
321 |
Q |
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| T |
41350183 |
gctcaaacataaaaatagggcatgtgggagaaaacaaggttgtttctggtggttttgctgttgttatattctcttggttggcaaactggtctaattttat |
41350282 |
T |
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| Q |
322 |
attagaataattataattgaggtgggaatgatgaacaacattttgtgtaacattattggtggttgaattagagcttgatgaatgctttcttatattctt |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41350283 |
attagaataattataattgaggtgggaatgatgaacaacattttgtgtaacattattggtggttgaattagagcttgatgaatgctttcttattttctt |
41350381 |
T |
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