View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_305 (Length: 242)
Name: NF11557A_low_305
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_305 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 7446679 - 7446463
Alignment:
| Q |
15 |
tttgtcctaaagaaccggttgcatgctagtgtttcttctctctaacaacaacatttagtggattaaactaagcaaacaacttttt-agagctaaacgaga |
113 |
Q |
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| T |
7446679 |
tttgtcctaaagaaccggttgcatgctagtgtttcttctctctatcaacaacatttagtggattaaactaagcaaacaacttttttagagctaaacgaga |
7446580 |
T |
|
| Q |
114 |
atagaaaaaatatcaagaccaccagagaagaaacatggtaacatgcttgccctaaattgacgttactgctgttgtgttgagacaaataaaaacaaaacac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7446579 |
atagaaaaaatatcaagaccaccagagaagaaacatggtaacatgcttgccctaaattgacgttactggtgttgtgttgagacaaataaaaacaaaacac |
7446480 |
T |
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| Q |
214 |
tatagtaatataatatt |
230 |
Q |
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||||||||||||||||| |
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| T |
7446479 |
tatagtaatataatatt |
7446463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 112 - 230
Target Start/End: Complemental strand, 7461569 - 7461451
Alignment:
| Q |
112 |
gaatagaaaaaatatcaagaccaccagagaagaaacatggtaacatgcttgccctaaattgacgttactgctgttgtgttgagacaaataaaaacaaaac |
211 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
7461569 |
gaataaaaaaaaaatcaagaccaccagagaagaaacatggtagcatgcttgccctaaattgacgttactagtgttgtgttgatacaaataaaaacaaaac |
7461470 |
T |
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| Q |
212 |
actatagtaatataatatt |
230 |
Q |
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| T |
7461469 |
actatagtaatataatatt |
7461451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 7461677 - 7461596
Alignment:
| Q |
15 |
tttgtcctaaagaaccggttgcatgctagtgtttcttctctctaacaacaacatttagtggattaaactaagcaaacaacttttt |
99 |
Q |
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||||||||||||||| |||||||||||||| | |||||||| |||||||||| | |||||||||||||||||||||||| |
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| T |
7461677 |
tttgtcctaaagaactcgttgcatgctagtgcctattctctct---ttcaacatttagggtattaaactaagcaaacaacttttt |
7461596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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