View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_306 (Length: 241)
Name: NF11557A_low_306
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_306 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 239
Target Start/End: Complemental strand, 31700972 - 31700739
Alignment:
| Q |
7 |
gcagtatccattgactcca-atagaccatagtggtcactatagtctgctggtatttttgaataaagcatccataattcgtcgtcttttgaccatatgtag |
105 |
Q |
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| T |
31700972 |
gcagtatccattgactccacatagaccatagtggtcacaatagtctgctggtatttttgaataaagcatccataattcgtcgtcttttgaccatatgtag |
31700873 |
T |
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| Q |
106 |
cgtggacgttcataactggtttggttaagtaccacttttgatattagtgaactatctttgatgttccatgtgtaataaacctcttctttattgcagatga |
205 |
Q |
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| T |
31700872 |
cgtggacgttcataactggtttggttaagtaccacttttgatattagtgaactatctttgatgttccatgtgtaataaacctcttctttattgcagatga |
31700773 |
T |
|
| Q |
206 |
agttgtaattgtaaacgttattaggcttcatatc |
239 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
31700772 |
agttgtaattgtaaacgttattaggcttcatatc |
31700739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 31723521 - 31723329
Alignment:
| Q |
11 |
tatccattgactcca-atagaccatagtggtcactatagtctgctggtatttttgaataaagcatccataattcgtcgtcttttgaccatatgtagcgtg |
109 |
Q |
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| T |
31723521 |
tatccattgactccacatcgaccataatggtcacaatcgtctcctggtattcttgaataaatattccatgatttgtcgtcctttgaccatacgtatcgtg |
31723422 |
T |
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| Q |
110 |
gacgttcataactggtttggttaagtaccacttttgatattagtgaactatctttgatgttccatgtgtaataaacctcttctttattgcaga |
202 |
Q |
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| T |
31723421 |
gacgatcgttactggtttggttaagtaccacttttgatatttgagtactatctttgatgttccatgtgtaataaacctcttctttattgcaga |
31723329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 31716276 - 31716051
Alignment:
| Q |
11 |
tatccattgactcca-atagaccatagtggtcactatagtctgctggtatttttgaataaagcatccataattcgtcgtcttttgaccatatgtagcgtg |
109 |
Q |
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||||||||||||||| || ||||||| ||||||| | |||| | |||||| ||||||||| | ||||| ||||| ||||||||||||||| |||||||| |
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| T |
31716276 |
tatccattgactccacattgaccataatggtcacaaatgtctccaggtattcttgaataaaccctccatgattcgacgtcttttgaccatacgtagcgtg |
31716177 |
T |
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| Q |
110 |
gacgttcataactggtttggttaagtaccacttttgatattagtgaactatctttgatgttccatgtgtaataaacctcttctttattgcagatgaagtt |
209 |
Q |
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| T |
31716176 |
gacgatctttactggtttggttaagtaccatttttgatacttgagaactatctttgatgttccatgtgtaataaacctcttctttattccagacaaaatt |
31716077 |
T |
|
| Q |
210 |
gtaattgtaaacgttattaggcttca |
235 |
Q |
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| T |
31716076 |
gtaactgaaaatatcattaggcttca |
31716051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 31722150 - 31721925
Alignment:
| Q |
11 |
tatccattgactcca-atagaccatagtggtcactatagtctgctggtatttttgaataaagcatccataattcgtcgtcttttgaccatatgtagcgtg |
109 |
Q |
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||||||||||||||| || ||||||| ||||||| | |||| | |||||| ||||||||| | ||||| ||||| ||||||||||||||| |||||||| |
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| T |
31722150 |
tatccattgactccacattgaccataatggtcacaaatgtctccaggtattcttgaataaaccctccatgattcgacgtcttttgaccatacgtagcgtg |
31722051 |
T |
|
| Q |
110 |
gacgttcataactggtttggttaagtaccacttttgatattagtgaactatctttgatgttccatgtgtaataaacctcttctttattgcagatgaagtt |
209 |
Q |
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| T |
31722050 |
gacgatctttactggtttggttaagtaccatttttgatacttgagaactatctttgatgttccatgtgtaataaacctcttctttattccagacaaaatt |
31721951 |
T |
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| Q |
210 |
gtaattgtaaacgttattaggcttca |
235 |
Q |
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| T |
31721950 |
gtaactgaaaatatcattaggcttca |
31721925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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