View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_308 (Length: 241)
Name: NF11557A_low_308
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_308 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 48344739 - 48344945
Alignment:
| Q |
14 |
gtttggaaagaaaaagaaaagatcactacacaaatagacagaaagttgcatcttgatcatgagattcatgaccaagatgttatgtttttcagctcaactt |
113 |
Q |
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| T |
48344739 |
gtttgtaaagaaaaagaaaaaatcacaacacaaatagacagaaagttgcatcttgatcatgagattcatgaccaagatgttatgtttttcagctcaactt |
48344838 |
T |
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| Q |
114 |
caagttcttcagattcacgtggtttattatcgtcctcctccgaaacagaatcaatgtacaaagccaaatcacgaggtggttcgtgtttcgctccttcaag |
213 |
Q |
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||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48344839 |
caagttcttcagattcaagtggtttattatcatcctcctccgaaacagaatcaatgtacaaagccaaatcacgaggtggttcgtgtttcgctccttcaag |
48344938 |
T |
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| Q |
214 |
acctaag |
220 |
Q |
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| T |
48344939 |
gcctaag |
48344945 |
T |
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