View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_310 (Length: 240)
Name: NF11557A_low_310
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_310 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 35449819 - 35450052
Alignment:
| Q |
1 |
tagagaaagagatgaagcacaagaaaaatgtgaaatacttctcttggaaaagctagttttccatcaacaacaaaatgctccactttccggagtttcaagc |
100 |
Q |
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| T |
35449819 |
tagagaaagagatgaagcacaagaaaaatgtcaaagacttctcttggaaaagctagttttccatcaacaacaaaatgatccactttccggagtttcaagc |
35449918 |
T |
|
| Q |
101 |
attgaagatgaacaagttacaagaaaaggaattgactcaaacaatggtttttctttgtcttcatcagattgtgaagaaagcattgtttcttcaccaatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35449919 |
attgaagatgaacaagttacaagaaaaggaattgactcaaacaatggtttttctttgtcttcttcagattgtgaagaaagcattgtttcttcaccaatta |
35450018 |
T |
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| Q |
201 |
ttgatcaatcaatgattgaagtactaacaccaaa |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
35450019 |
ttgatcaatcaatgattgaagtactaacaccaaa |
35450052 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 21010701 - 21010633
Alignment:
| Q |
2 |
agagaaagagatgaagcacaagaaaaatgtgaaatacttctcttggaaaagctagttttccatcaacaa |
70 |
Q |
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||||||||||||||||||||||||||||| ||| |||| |||| |||||| || ||||||| |||||| |
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| T |
21010701 |
agagaaagagatgaagcacaagaaaaatgccaaagacttttcttagaaaagttacttttccaacaacaa |
21010633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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