View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11557A_low_312 (Length: 240)

Name: NF11557A_low_312
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11557A_low_312
NF11557A_low_312
[»] scaffold1721 (1 HSPs)
scaffold1721 (21-235)||(1115-1329)
[»] scaffold0815 (1 HSPs)
scaffold0815 (74-209)||(4644-4778)
[»] chr3 (4 HSPs)
chr3 (19-90)||(15609976-15610047)
chr3 (39-90)||(15578952-15579003)
chr3 (39-90)||(15923800-15923851)
chr3 (46-90)||(15909631-15909675)
[»] chr7 (1 HSPs)
chr7 (39-93)||(5651055-5651109)
[»] scaffold0269 (1 HSPs)
scaffold0269 (39-116)||(14233-14313)
[»] scaffold0094 (1 HSPs)
scaffold0094 (19-91)||(30193-30265)
[»] chr8 (3 HSPs)
chr8 (57-93)||(39631053-39631089)
chr8 (57-93)||(39640601-39640637)
chr8 (57-90)||(15449794-15449827)
[»] scaffold0770 (1 HSPs)
scaffold0770 (35-70)||(1391-1426)
[»] scaffold0029 (1 HSPs)
scaffold0029 (35-70)||(99695-99730)
[»] chr2 (2 HSPs)
chr2 (39-90)||(39650158-39650209)
chr2 (54-90)||(44370797-44370833)
[»] scaffold0182 (1 HSPs)
scaffold0182 (57-90)||(5766-5799)
[»] chr6 (2 HSPs)
chr6 (54-90)||(22060241-22060277)
chr6 (57-90)||(22632230-22632263)
[»] scaffold0378 (1 HSPs)
scaffold0378 (58-116)||(1170-1231)
[»] chr5 (2 HSPs)
chr5 (17-70)||(12386780-12386833)
chr5 (17-70)||(12395473-12395526)
[»] chr1 (1 HSPs)
chr1 (29-70)||(22839701-22839742)


Alignment Details
Target: scaffold1721 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold1721
Description:

Target: scaffold1721; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 1329 - 1115
Alignment:
Q  21 gttctgccgtgtccttcctgtgttctgcaggttatgtatttatagtgctgggctgaggctagggtttgttgaggaaaagcacaaaaactgtgcttttgga 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  1329 gttctgccgtgtccttcctgtgttctgcaggttatgtatttatagtgctgggctgatgttagggtttgttgaggaaaagcacaaaaactgtgcttttgga 1230  T
Q  121 ttgagatgaaagcaaaacgcggattcaatgttactggattgctgcagatgaggctgtgaactggaatggatgaacgtgacagactgttttctgaatttgg 220  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1229 ttgagatgaaagcaaaacgcggattgaatgttactggattgctgcagatgaggctgtgaactggaatggatgaacgtgacagactgttttctgaatttgg 1130  T
Q  221 accattttgttggac 235  Q
    |||||||||||||||    
T  1129 accattttgttggac 1115  T

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Target: scaffold0815 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 74 - 209
Target Start/End: Original strand, 4644 - 4778
Alignment:
Q  74 tgaggctagggtttgttgaggaaaagcacaaaaactgtgcttttggattgagatgaaagcaaaacgcggattcaatgttactggattgctgcagatgagg 173  Q
    |||||||| ||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||| ||| ||| || |||||||| |||||||||||    
T  4644 tgaggctaaggtttgttgaggagaagcacaaaagctgtgcttttggattgagat-aaagcaaaacgcgtattgaatattcctggattgttgcagatgagg 4742  T
Q  174 ctgtgaactggaatggatgaacgtgacagactgttt 209  Q
    ||||||||||||||||||||| ||||||| ||||||    
T  4743 ctgtgaactggaatggatgaatgtgacaggctgttt 4778  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 15609976 - 15610047
Alignment:
Q  19 gtgttctgccgtgtccttcctgtgttctgcaggttatgtatttatagtgctgggctgaggctagggtttgtt 90  Q
    ||||||||||||||  ||  |||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  15609976 gtgttctgccgtgtgttttttgtgctctgcaggttctgtatttatagtgctgggctgaggctagggtttgtt 15610047  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 15578952 - 15579003
Alignment:
Q  39 tgtgttctgcaggttatgtatttatagtgctgggctgaggctagggtttgtt 90  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  15578952 tgtgctctgcaggttctgtatttatagtgctgggctgaggctagggtttgtt 15579003  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 15923851 - 15923800
Alignment:
Q  39 tgtgttctgcaggttatgtatttatagtgctgggctgaggctagggtttgtt 90  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  15923851 tgtgctctgcaggttaagtatttatagtgctgggctgaggctagggtttgtt 15923800  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 15909675 - 15909631
Alignment:
Q  46 tgcaggttatgtatttatagtgctgggctgaggctagggtttgtt 90  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||    
T  15909675 tgcaggttaagtatttatattgctgggctgaggctagggtttgtt 15909631  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 5651055 - 5651109
Alignment:
Q  39 tgtgttctgcaggttatgtatttatagtgctgggctgaggctagggtttgttgag 93  Q
    |||||| |||||| | | |||||||||||||||||||||||||||||||||||||    
T  5651055 tgtgttgtgcaggctctatatttatagtgctgggctgaggctagggtttgttgag 5651109  T

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Target: scaffold0269 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 116
Target Start/End: Original strand, 14233 - 14313
Alignment:
Q  39 tgtgttctgcaggttatgtatttatagtgctgggctgagg--ctagggtttgttgaggaaaagcac-aaaaactgtgcttt 116  Q
    |||||| ||||||||  ||||||||||||||||| | |||  ||||||||||||||||| |||||| ||||||||||||||    
T  14233 tgtgttgtgcaggttgggtatttatagtgctgggtttagggactagggtttgttgaggagaagcacaaaaaactgtgcttt 14313  T

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Target: scaffold0094 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 30193 - 30265
Alignment:
Q  19 gtgttctgccgtgtccttcctgtgttctgcaggttatgtatttatagtgctgggctgaggctagggtttgttg 91  Q
    ||||||||||||||  ||| |||||| |||||||||||||||||||| ||  |||||| ||| ||||||||||    
T  30193 gtgttctgccgtgtgtttcttgtgttgtgcaggttatgtatttatagggcaaggctgatgcttgggtttgttg 30265  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 39631053 - 39631089
Alignment:
Q  57 tatttatagtgctgggctgaggctagggtttgttgag 93  Q
    |||||||||||||||||||||||||||||||||||||    
T  39631053 tatttatagtgctgggctgaggctagggtttgttgag 39631089  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 39640601 - 39640637
Alignment:
Q  57 tatttatagtgctgggctgaggctagggtttgttgag 93  Q
    |||||||||||||||||||||||||||||||||||||    
T  39640601 tatttatagtgctgggctgaggctagggtttgttgag 39640637  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 15449794 - 15449827
Alignment:
Q  57 tatttatagtgctgggctgaggctagggtttgtt 90  Q
    ||||||||||||||||||||||||||||||||||    
T  15449794 tatttatagtgctgggctgaggctagggtttgtt 15449827  T

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Target: scaffold0770 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0770
Description:

Target: scaffold0770; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 1426 - 1391
Alignment:
Q  35 ttcctgtgttctgcaggttatgtatttatagtgctg 70  Q
    ||||||||||||||||||||||||||||||||||||    
T  1426 ttcctgtgttctgcaggttatgtatttatagtgctg 1391  T

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Target: scaffold0029 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 99730 - 99695
Alignment:
Q  35 ttcctgtgttctgcaggttatgtatttatagtgctg 70  Q
    ||||||||||||||||||||||||||||||||||||    
T  99730 ttcctgtgttctgcaggttatgtatttatagtgctg 99695  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 39650209 - 39650158
Alignment:
Q  39 tgtgttctgcaggttatgtatttatagtgctgggctgaggctagggtttgtt 90  Q
    |||||| |||||| | | ||||||||||||||||||||||||||||||||||    
T  39650209 tgtgttgtgcaggctctatatttatagtgctgggctgaggctagggtttgtt 39650158  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 44370833 - 44370797
Alignment:
Q  54 atgtatttatagtgctgggctgaggctagggtttgtt 90  Q
    ||||||||||||| |||||||||||||||||||||||    
T  44370833 atgtatttatagtactgggctgaggctagggtttgtt 44370797  T

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Target: scaffold0182 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 90
Target Start/End: Complemental strand, 5799 - 5766
Alignment:
Q  57 tatttatagtgctgggctgaggctagggtttgtt 90  Q
    ||||||||||||||||||||||||||||||||||    
T  5799 tatttatagtgctgggctgaggctagggtttgtt 5766  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 22060277 - 22060241
Alignment:
Q  54 atgtatttatagtgctgggctgaggctagggtttgtt 90  Q
    ||||||||||||| |||||||||||||||||||||||    
T  22060277 atgtatttatagtactgggctgaggctagggtttgtt 22060241  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 90
Target Start/End: Complemental strand, 22632263 - 22632230
Alignment:
Q  57 tatttatagtgctgggctgaggctagggtttgtt 90  Q
    |||||||||||||||| |||||||||||||||||    
T  22632263 tatttatagtgctgggttgaggctagggtttgtt 22632230  T

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Target: scaffold0378 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0378
Description:

Target: scaffold0378; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 1231 - 1170
Alignment:
Q  58 atttatagtgctgggctgagg--ctagggtttgttgaggaaaagcacaaaaa-ctgtgcttt 116  Q
    ||||||||||||||| | |||  ||||||||||||||||| ||||||||||| |||||||||    
T  1231 atttatagtgctgggtttagggactagggtttgttgaggagaagcacaaaaatctgtgcttt 1170  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 12386780 - 12386833
Alignment:
Q  17 ccgtgttctgccgtgtccttcctgtgttctgcaggttatgtatttatagtgctg 70  Q
    ||||||||||  ||||  ||||| |||| |||||||||||||||||||||||||    
T  12386780 ccgtgttctgttgtgtgtttcctttgttatgcaggttatgtatttatagtgctg 12386833  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 12395473 - 12395526
Alignment:
Q  17 ccgtgttctgccgtgtccttcctgtgttctgcaggttatgtatttatagtgctg 70  Q
    ||||||||||  ||||  ||||| |||| |||||||||||||||||||||||||    
T  12395473 ccgtgttctgttgtgtgtttcctttgttatgcaggttatgtatttatagtgctg 12395526  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 22839701 - 22839742
Alignment:
Q  29 gtgtccttcctgtgttctgcaggttatgtatttatagtgctg 70  Q
    |||||||||||||||| |  ||||||||||||||||||||||    
T  22839701 gtgtccttcctgtgttgtataggttatgtatttatagtgctg 22839742  T

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