View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_313 (Length: 239)
Name: NF11557A_low_313
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_313 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 43239342 - 43239107
Alignment:
| Q |
4 |
atgaaaagctgccaagagccaattagcataagctgtgtagagtccaataacaaagagcaatatgataccccatgtccaacctaatggaaccattatcagg |
103 |
Q |
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| T |
43239342 |
atgaaaagctgccaagagccaattagcataagctgtgtagagtccaataacaaagagcaatatgataccccatgtccaacctaatggaaccattatcagg |
43239243 |
T |
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| Q |
104 |
ttagagaaactgaatatcaaaccacagttgaagcctgtcaccaacatcaaccccacttgttgccatgaatctgcaaattgaatgaaacactcattaatga |
203 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43239242 |
ttagagaaactgaatatccaaccacagttgaagcctgtcaccaacatcaaccccacttgttgccatgaatctgcaaattgaatgaaacacccattaatga |
43239143 |
T |
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| Q |
204 |
tgttaacaattactaacaaaacagcatagaaaaatg |
239 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
43239142 |
tgttaacaattactaacaaaacagcatagaaaaatg |
43239107 |
T |
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