View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11557A_low_315 (Length: 239)
Name: NF11557A_low_315
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_315 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 91 - 170
Target Start/End: Original strand, 13879697 - 13879776
Alignment:
| Q |
91 |
cagctcattggtgttgaaatagtgaatgagtcgaggagcagcgtaggagatggcaaccagagacatggcggcagtagcga |
170 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13879697 |
cagctcattggtgttgaaatagcgaatgagtcgtggagtggcgtaggagatggcaaccagagacatggcggcagtagcga |
13879776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 13879630 - 13879675
Alignment:
| Q |
21 |
actcctcagtctccgtaaaatcccagagaacaagatcatcatcatc |
66 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13879630 |
actcctcagtctccgtaaaatcccagagaacaagatcatcatcatc |
13879675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 94 - 170
Target Start/End: Original strand, 13875477 - 13875553
Alignment:
| Q |
94 |
ctcattggtgttgaaatagtgaatgagtcgaggagcagcgtaggagatggcaaccagagacatggcggcagtagcga |
170 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| || | |||||||||||| || || ||||||||||||||||||| |
|
|
| T |
13875477 |
ctcattggtgttgaaatagcgaatgagtggaggtgcggtgtaggagatggctacgagtgacatggcggcagtagcga |
13875553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University