View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_316 (Length: 239)
Name: NF11557A_low_316
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_316 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 6074000 - 6073809
Alignment:
| Q |
18 |
gtttcctcagactgagttgttcaatcttgatgagggtaatagtgggtttcacaattctaacaatgcaattaccccgcctactaacaatgaatatttcgca |
117 |
Q |
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| T |
6074000 |
gtttcctcagactgagttgttcaatcttgatgagggtaatagtgggtttcacaattctaacaatgcaattaccccgcctactaacaatgaatatttcgca |
6073901 |
T |
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| Q |
118 |
cggcaagcttttagttttccagaacaatgcagcatctcaaatcaatctgttatcttaccctcggcgaccaatatagcttcatttgatacctc |
209 |
Q |
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| T |
6073900 |
cggcaagcttttagttttccagaacaatgcagcatctcaaatcaatctgttatcttaccctcggcgaccaatatagcttcatttgatacctc |
6073809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 5757113 - 5757304
Alignment:
| Q |
18 |
gtttcctcagactgagttgttcaatcttgatgagggtaatagtgggtttcacaattctaacaatgcaattaccccgcctactaacaatgaatatttcgca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5757113 |
gtttcctcagactgagttgttcaatcttgatgagggtaatagtgggtttcacaattctaacaatgcaattaccccgcctactaacaatgaatatttcgca |
5757212 |
T |
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| Q |
118 |
cggcaagcttttagttttccagaacaatgcagcatctcaaatcaatctgttatcttaccctcggcgaccaatatagcttcatttgatacctc |
209 |
Q |
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| T |
5757213 |
cggcaagcttttagttttccagaacaatgcagcatctcaaatcaatctgttatcttaccctcgtcgaccaatatagcttcatttgatacctc |
5757304 |
T |
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