View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11557A_low_317 (Length: 239)

Name: NF11557A_low_317
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11557A_low_317
NF11557A_low_317
[»] chr1 (4 HSPs)
chr1 (30-222)||(7386417-7386609)
chr1 (49-185)||(19991215-19991350)
chr1 (48-132)||(19322649-19322733)
chr1 (191-222)||(19322751-19322782)
[»] chr5 (3 HSPs)
chr5 (30-222)||(4925202-4925399)
chr5 (30-185)||(35205787-35205942)
chr5 (50-166)||(35211228-35211344)
[»] chr3 (3 HSPs)
chr3 (30-185)||(52314493-52314648)
chr3 (30-185)||(53464903-53465058)
chr3 (53-150)||(1995809-1995906)
[»] chr4 (2 HSPs)
chr4 (30-182)||(23563558-23563710)
chr4 (37-154)||(48265287-48265404)
[»] chr2 (2 HSPs)
chr2 (30-120)||(39375514-39375604)
chr2 (179-222)||(39375627-39375670)
[»] chr8 (1 HSPs)
chr8 (30-141)||(40278493-40278604)
[»] chr7 (1 HSPs)
chr7 (30-148)||(45888823-45888941)


Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 30 - 222
Target Start/End: Complemental strand, 7386609 - 7386417
Alignment:
Q  30 gagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaac 129  Q
    |||||||||||||| |  |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||     
T  7386609 gagcatacacatcgcccatccatatgggtggtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaattgagtagttaaat 7386510  T
Q  130 tatacatggtagcaatgcattactacgttccttttccagtaattgttagattttgtaatactttgagttttatttcttttaattaatagtata 222  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7386509 tatacatggtagcaatgcattactacgttccttttcctgtaattgtcagattttgtaatactttgagttttatttcttttaattaatagtata 7386417  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 49 - 185
Target Start/End: Original strand, 19991215 - 19991350
Alignment:
Q  49 ccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaactatacatggtagcaatgca 148  Q
    |||||||||||||||||||||  |||||||| | ||||||||| ||||| |||||||||| ||| ||||||||||||||||||| |||||||  |||| |    
T  19991215 ccatatgggtggtatcacactgcccaatgcttttgtgtcataagatcatggataattggcattgaaattgagtagttaaactatccatggtaataatgga 19991314  T
Q  149 ttactacgttccttttccagtaattgttagattttgt 185  Q
    ||||||| |||||||||| | ||||||| ||||||||    
T  19991315 ttactaccttccttttcctgcaattgtt-gattttgt 19991350  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 19322649 - 19322733
Alignment:
Q  48 tccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaactat 132  Q
    |||||||||||||||| ||| ||||||| | ||| |||||||||||||||  |||||||||||| ||||||||||||||||||||    
T  19322649 tccatatgggtggtattacaataaccaacgttcttgtgtcataatatcatgaataattggctttagaattgagtagttaaactat 19322733  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 222
Target Start/End: Original strand, 19322751 - 19322782
Alignment:
Q  191 tttgagttttatttcttttaattaatagtata 222  Q
    ||||||||||||||||||||||||||||||||    
T  19322751 tttgagttttatttcttttaattaatagtata 19322782  T

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Target: chr5 (Bit Score: 119; Significance: 6e-61; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 30 - 222
Target Start/End: Complemental strand, 4925399 - 4925202
Alignment:
Q  30 gagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaac 129  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  4925399 gagcatacgcatcgtctgtccatatgggtggtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaattgagtagttaaac 4925300  T
Q  130 tatacatggtagcaatgcattactacgttccttttccagtaattgttagattttgt-----------aatactttgagttttatttcttttaattaatag 218  Q
    ||||||||||| ||||||||||||||||||||      |||||||||||||||| |           |||||||||||| ||||||||||||||||||||    
T  4925299 tatacatggtaacaatgcattactacgttcct------gtaattgttagattttatacatattttagaatactttgagtattatttcttttaattaatag 4925206  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 30 - 185
Target Start/End: Complemental strand, 35205942 - 35205787
Alignment:
Q  30 gagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaac 129  Q
    |||||| ||||||| |||  |||||||||||||||||| || |||||||| | ||||||||| |||||  ||||||||| ||| |||||||| |||||||    
T  35205942 gagcatgcacatcgcctgcacatatgggtggtatcacattacccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtggttaaac 35205843  T
Q  130 tatacatggtagcaatgcattactacgttccttttccagtaattgttagattttgt 185  Q
    ||| ||||| || ||||||||||| | |||||||||| | ||||||  ||||||||    
T  35205842 tatccatggaagtaatgcattactgccttccttttcctgcaattgtctgattttgt 35205787  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 50 - 166
Target Start/End: Original strand, 35211228 - 35211344
Alignment:
Q  50 catatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaactatacatggtagcaatgcat 149  Q
    |||||||||||||||||| || |||||||| | ||||||||| |||||  ||||||||| ||| |||||||| |||||||||| |||||||| |||||||    
T  35211228 catatgggtggtatcacattacccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtggttaaactatccatggtagtaatgcat 35211327  T
Q  150 tactacgttccttttcc 166  Q
    |||| | ||||||||||    
T  35211328 tactgccttccttttcc 35211344  T

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Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 30 - 185
Target Start/End: Complemental strand, 52314648 - 52314493
Alignment:
Q  30 gagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaac 129  Q
    |||||| ||||||| |||  |||||||||||||||||| |  |||||||| | ||||||||| |||||  ||||||||| ||| ||||||||||||||||    
T  52314648 gagcatgcacatcgcctgcacatatgggtggtatcacattgcccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtagttaaac 52314549  T
Q  130 tatacatggtagcaatgcattactacgttccttttccagtaattgttagattttgt 185  Q
    ||| |||||||| ||||||||||||| |||||||||| | ||||||  ||||||||    
T  52314548 tatccatggtagtaatgcattactaccttccttttcctgcaattgtctgattttgt 52314493  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 30 - 185
Target Start/End: Complemental strand, 53465058 - 53464903
Alignment:
Q  30 gagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaac 129  Q
    |||||| ||||||| |||  |||||||||||||||||| |  |||||||| | ||||||||| |||||  ||||||||| ||| ||||||||||||||||    
T  53465058 gagcatgcacatcgcctgcacatatgggtggtatcacattgcccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtagttaaac 53464959  T
Q  130 tatacatggtagcaatgcattactacgttccttttccagtaattgttagattttgt 185  Q
    ||| |||||||| ||||||||||||| |||||||||| | ||||||  ||||||||    
T  53464958 tatccatggtagtaatgcattactaccttccttttcctgcaattgtctgattttgt 53464903  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 1995906 - 1995809
Alignment:
Q  53 atgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaactatacatggtagcaatgcatt 150  Q
    ||||||||||  ||||| || ||||| || | ||||||||||| | |||||||||| |||||  ||||||| ||||| |  ||| |||||||||||||    
T  1995906 atgggtggtaatacactgactaatgcacttgagtcataatatcttggataattggcattggatatgagtagctaaaccaaccatagtagcaatgcatt 1995809  T

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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 23563710 - 23563558
Alignment:
Q  30 gagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaac 129  Q
    |||||| ||||||| |||   |||||||||||||||||||  |||||||| | ||||||||| ||||| |||||||| | ||| ||||||||||||||||    
T  23563710 gagcatgcacatcggctgcatatatgggtggtatcacactgcccaatgcttttgtgtcataagatcatggataattgacattgaaattgagtagttaaac 23563611  T
Q  130 tatacatggtagcaatgcattactacgttccttttccagtaattgttagattt 182  Q
    ||| |||||| | ||||||||||||| |||||||||| | |||||| ||||||    
T  23563610 tatccatggtggtaatgcattactaccttccttttcctgcaattgtcagattt 23563558  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 37 - 154
Target Start/End: Complemental strand, 48265404 - 48265287
Alignment:
Q  37 cacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaactatacat 136  Q
    ||||||| |||  ||||||||||||||||||||  |||||||| | ||||||||| ||||| |||||||||| ||| ||||||||||||||||||| |||    
T  48265404 cacatcgcctgcacatatgggtggtatcacactgtccaatgcttttgtgtcataagatcatggataattggcattgaaattgagtagttaaactatccat 48265305  T
Q  137 ggtagcaatgcattacta 154  Q
    ||||| ||||||||||||    
T  48265304 ggtagtaatgcattacta 48265287  T

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Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 39375514 - 39375604
Alignment:
Q  30 gagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgag 120  Q
    |||||||||||| | ||||||||||||||||||||| |||||||||| |||| ||||||||||||||| ||||||||||||||||||||||    
T  39375514 gagcatacacattgcctgtccatatgggtggtatcatactaaccaatactcttgtgtcataatatcatggataattggctttggaattgag 39375604  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 39375627 - 39375670
Alignment:
Q  179 attttgtaatactttgagttttatttcttttaattaatagtata 222  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||    
T  39375627 attttgtaatactttaagttttatttcttttaattaataatata 39375670  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 40278493 - 40278604
Alignment:
Q  30 gagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaac 129  Q
    |||||||||||||| |||  ||||||||||||||||||||  |||||||| | ||||||||| ||||| |||||||| | ||| ||||||||||||||||    
T  40278493 gagcatacacatcgcctgcacatatgggtggtatcacactggccaatgcttttgtgtcataaaatcatggataattgacattgaaattgagtagttaaac 40278592  T
Q  130 tatacatggtag 141  Q
    ||| ||||||||    
T  40278593 tatccatggtag 40278604  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 148
Target Start/End: Complemental strand, 45888941 - 45888823
Alignment:
Q  30 gagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaac 129  Q
    |||||||||||||||| ||| | || |||||||  ||| ||||||||||| | |||||||| || | | |||||||||| |||||  ||||||| ||||     
T  45888941 gagcatacacatcgtcggtcaaaataggtggtaatacattaaccaatgcttttgtgtcatagtaacttggataattggcattggatatgagtagctaaat 45888842  T
Q  130 tatacatggtagcaatgca 148  Q
    ||| ||| || ||||||||    
T  45888841 tatccatagttgcaatgca 45888823  T

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