View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_319 (Length: 239)
Name: NF11557A_low_319
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_319 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 48192520 - 48192308
Alignment:
| Q |
18 |
caaacacaacacttgaacagatttctcagcttgcaatacctgatggagacactatgcagagaattgctgcatatttcactgaagtacttactgataggat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48192520 |
caaacacaacacttgaacagatttctcagcttgcaattcctgatgaagacactatgcagagaattgctgcatatttcactgaagcacttactgataggat |
48192421 |
T |
|
| Q |
118 |
acataaaacttggcctggactccatagaggcttaaattccacaagaattattatgctttctgaagaaattatggttcagaagtttttctttgaacttttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48192420 |
acataaaacttggcctggactccatagaggcttaaattccacaagaattattatgctttctgaagaaattatggttcagaagtttttctttgaacttttc |
48192321 |
T |
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| Q |
218 |
ccttacttgaagg |
230 |
Q |
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|
||||||||||||| |
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| T |
48192320 |
ccttacttgaagg |
48192308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 2086617 - 2086405
Alignment:
| Q |
18 |
caaacacaacacttgaacagatttctcagcttgcaatacctgatggagacactatgcagagaattgctgcatatttcactgaagtacttactgataggat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
2086617 |
caaacacaacacttgaacagatttctcagcttgcaactcctgatggagacactatgcagagaattgctgcatatttcactgaagcacttgctgataggat |
2086518 |
T |
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| Q |
118 |
acataaaacttggcctggactccatagaggcttaaattccacaagaattattatgctttctgaagaaattatggttcagaagtttttctttgaacttttc |
217 |
Q |
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|| ||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
2086517 |
actcaaaacctggccaggactccatagagccttaaattccacaagaattattatgctttctgaagaaattatggttcagaaatttttctttgagcttttc |
2086418 |
T |
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| Q |
218 |
ccttacttgaagg |
230 |
Q |
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|||| ||||||| |
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| T |
2086417 |
ccttttttgaagg |
2086405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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