View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_331 (Length: 236)
Name: NF11557A_low_331
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_331 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 21 - 227
Target Start/End: Complemental strand, 42975993 - 42975787
Alignment:
| Q |
21 |
taatggtggtcctggttgttcttccattgcttatggtgcttcggaagaaattggtccttttcgcattaggcctgatggcaagtcactttacttgaatcct |
120 |
Q |
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| T |
42975993 |
taatggtggtcctggttgttcttccattgcttatggtgcttcggaagaaattggtccttttcgcattaggcctgatggcaagtcactttacttgaatcct |
42975894 |
T |
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| Q |
121 |
tatgcttggaacaattgtaagttgaattctcgtataatgaaattcaaccctcgttgcttcgattcatcgaactaaaaaataccggtactaatgtttatat |
220 |
Q |
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| T |
42975893 |
tatgcttggaacaattgtaagttgaattctcgtataatgaaattcaacccttgttgcttcgattcatcgaactaaaaaataccggtactaatgtttatta |
42975794 |
T |
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| Q |
221 |
ttttgga |
227 |
Q |
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||||||| |
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| T |
42975793 |
ttttgga |
42975787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 42981890 - 42981769
Alignment:
| Q |
21 |
taatggtggtcctggttgttcttccattgcttatggtgcttcggaagaaattggtccttttcgcattaggcctgatggcaagtcactttacttgaatcct |
120 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||| |||||||| | |
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| T |
42981890 |
taatggtggtcctggttgttcttctattgcttatggtgcttctgaagaaattggtccttttcgtattaggcctgatggcaaatcacttttcttgaatcgt |
42981791 |
T |
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| Q |
121 |
tatgcttggaacaattgtaagt |
142 |
Q |
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| T |
42981790 |
tatgcttggaacaattgtaagt |
42981769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 26633815 - 26633875
Alignment:
| Q |
22 |
aatggtggtcctggttgttcttccattgcttatggtgcttcggaagaaattggtccttttc |
82 |
Q |
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| T |
26633815 |
aatggtggtcctggttgttcttctattgcttatggtgaagctgaggaaattggtccttttc |
26633875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 26641280 - 26641340
Alignment:
| Q |
22 |
aatggtggtcctggttgttcttccattgcttatggtgcttcggaagaaattggtccttttc |
82 |
Q |
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||||||||||||||||||||||| ||||||||||||| | || |||||||||||||||| |
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| T |
26641280 |
aatggtggtcctggttgttcttctattgcttatggtgaagctgaggaaattggtccttttc |
26641340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 26626254 - 26626314
Alignment:
| Q |
22 |
aatggtggtcctggttgttcttccattgcttatggtgcttcggaagaaattggtccttttc |
82 |
Q |
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||||||||||||||||||||||| ||||||| ||||| | ||||||||||| ||||||| |
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| T |
26626254 |
aatggtggtcctggttgttcttctattgcttttggtgaagctgaagaaattggcccttttc |
26626314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 34253843 - 34253903
Alignment:
| Q |
22 |
aatggtggtcctggttgttcttccattgcttatggtgcttcggaagaaattggtccttttc |
82 |
Q |
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|||||||||||||||||||| || ||||||||||||| | || |||||||||||||||| |
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| T |
34253843 |
aatggtggtcctggttgttcatctattgcttatggtgaggctgaggaaattggtccttttc |
34253903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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