View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_332 (Length: 236)
Name: NF11557A_low_332
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_332 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 236
Target Start/End: Original strand, 20816291 - 20816523
Alignment:
| Q |
4 |
atgtcgaaaaatatccaatggagtttcaattcggggggacacggtgggccctgtgaaagttgtaccgttgtattctactcttcccccggctatgcaacac |
103 |
Q |
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| T |
20816291 |
atgtcgcaaaatatccaatgaagttgcaattcggggggacacggtgggccctgtgaaagttgtaccgttgtattctactcttcccccggctatgcaacac |
20816390 |
T |
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| Q |
104 |
aggatttttgagccagctccacctccagttagagagggaggccttcctggaaggaagattttggtatcaacaaacatagcagaaacttcattgaccatcg |
203 |
Q |
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| T |
20816391 |
aggatttttgagccagctccacctccagttagagagggaggccttcctggaaggaagattttggtatcaacaaacatagcagaaacttcattgaccatca |
20816490 |
T |
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| Q |
204 |
atggtatagtctatgttgttgacactggattgg |
236 |
Q |
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| T |
20816491 |
atggtatagtctatgttgttgaccctggattgg |
20816523 |
T |
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Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 37 - 234
Target Start/End: Complemental strand, 38779821 - 38779624
Alignment:
| Q |
37 |
gggggacacggtgggccctgtgaaagttgtaccgttgtattctactcttcccccggctatgcaacacaggatttttgagccagctccacctccagttaga |
136 |
Q |
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| T |
38779821 |
gggggaccaggtgggccctgtgaaagccgtgccattatattctactcttcccccagctatgcaacagaagatttttgagccagctccacctccagttaag |
38779722 |
T |
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| Q |
137 |
gagggaggccttcctggaaggaagattttggtatcaacaaacatagcagaaacttcattgaccatcgatggtatagtctatgttgttgacactggatt |
234 |
Q |
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| T |
38779721 |
gagggaggcccccctggaaggaagattgtggtatcaacaaacatagcagaaacttccttgacaattgatggtatagtctatgttattgatcctggatt |
38779624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 46 - 234
Target Start/End: Complemental strand, 33388771 - 33388583
Alignment:
| Q |
46 |
ggtgggccctgtgaaagttgtaccgttgtattctactcttcccccggctatgcaacacaggatttttgagccagctccacctccagttagagagggaggc |
145 |
Q |
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|||||||||||||||||| || | |||||||||| |||||||| |||||||| || | |||||||||||||||||| |||||||||| ||||||||| |
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| T |
33388771 |
ggtgggccctgtgaaagtgttatcactgtattctacccttcccccagctatgcagcagaagatttttgagccagctccgcctccagttaaggagggaggc |
33388672 |
T |
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| Q |
146 |
cttcctggaaggaagattttggtatcaacaaacatagcagaaacttcattgaccatcgatggtatagtctatgttgttgacactggatt |
234 |
Q |
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|| |||||||| |||||| |||||||||||||||||||||||||||| ||||| || ||||||||||| |||||| ||||| ||||||| |
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| T |
33388671 |
ctccctggaagaaagattgtggtatcaacaaacatagcagaaacttctttgactattgatggtatagtatatgttattgaccctggatt |
33388583 |
T |
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