View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_333 (Length: 235)
Name: NF11557A_low_333
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_333 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 15 - 157
Target Start/End: Original strand, 20208955 - 20209097
Alignment:
| Q |
15 |
ttccctcgagactcgtgtcagtctccaaagttgctgttgctttgctatcatgttgaacttgaatctcttttgaagattcaaaatgaaagctaagtttctt |
114 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20208955 |
ttccctcgagactcgtttcagtctccaaagttgctgttgctttgctatcatgttgaacttgaatctcttttgaagattcaaaatgaaagctaagtttctt |
20209054 |
T |
|
| Q |
115 |
ggatgcttcattaggtttagcggtggaaaagaataacccattg |
157 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20209055 |
ggatgcttcattaggtttagcggtggaaaagaataacccattg |
20209097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 15 - 157
Target Start/End: Original strand, 20228663 - 20228805
Alignment:
| Q |
15 |
ttccctcgagactcgtgtcagtctccaaagttgctgttgctttgctatcatgttgaacttgaatctcttttgaagattcaaaatgaaagctaagtttctt |
114 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20228663 |
ttccctcgagactcgtttcagtctccaaagttgctgttgctttgctatcatgttgaacttgaatctcttttgaagattcaaaatgaaagctaagtttctt |
20228762 |
T |
|
| Q |
115 |
ggatgcttcattaggtttagcggtggaaaagaataacccattg |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20228763 |
ggatgcttcattaggtttagcggtggaaaagaataacccattg |
20228805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 15 - 157
Target Start/End: Original strand, 44293467 - 44293609
Alignment:
| Q |
15 |
ttccctcgagactcgtgtcagtctccaaagttgctgttgctttgctatcatgttgaacttgaatctcttttgaagattcaaaatgaaagctaagtttctt |
114 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44293467 |
ttccctcgagactcgtttcagtctccaaagttgctgttgctttgctatcatgttgaacttgaatctcttttgaagattcaaaatgaaagctaagtttctt |
44293566 |
T |
|
| Q |
115 |
ggatgcttcattaggtttagcggtggaaaagaataacccattg |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44293567 |
ggatgcttcattaggtttagcggtggaaaagaataacccattg |
44293609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 44663087 - 44662984
Alignment:
| Q |
32 |
tcagtctccaaagttgctgttgctttgctatcatgttgaacttgaatctcttttgaagattcaaaatgaaagctaagtttcttggatgcttcattaggtt |
131 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| |||||| ||| ||||||| |||| |
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| T |
44663087 |
tcagtctccaaagttgctgttgctttgctatcatgttgaacttgaatctctttagaagactcgaaatgaaagctaggtttctcagattcttcattcggtt |
44662988 |
T |
|
| Q |
132 |
tagc |
135 |
Q |
| |
|
|||| |
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|
| T |
44662987 |
tagc |
44662984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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