View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_343 (Length: 232)
Name: NF11557A_low_343
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_343 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0654 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 15730484 - 15730248
Alignment:
| Q |
5 |
aaaagatataagttaacttattttgtgttgtttaacatgttttattattaatgnnnnnnnnnc--------tatttgtttattcatatatacatttcagg |
96 |
Q |
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| T |
15730484 |
aaaagatattagttaacttattttgagttgtttaacatgttttattattaatgaaaaaaaaactatttatttatttatttattcatatatacattttagg |
15730385 |
T |
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| Q |
97 |
--gnnnnnnnnnnctatttgttaacttttattttatgagatttacttgaagagagaaagttatagttacacatgaattttatttttgttacaaaattttc |
194 |
Q |
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| T |
15730384 |
gagagaaaaaaaactatttgttaacttttattttatgagatttacttgaagagagaaagttatagttacacatgaatttt-tttttgttacataattttc |
15730286 |
T |
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| Q |
195 |
ttaatcttttgacgtttgttttctctctattctaaatt |
232 |
Q |
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| T |
15730285 |
ttaatcttttgacgtttgttttctctctattctaaatt |
15730248 |
T |
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Target: scaffold0654 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0654
Description:
Target: scaffold0654; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 3845 - 3772
Alignment:
| Q |
111 |
tttgttaacttttattttatgagatttacttgaagagagaaagtta----tagttacacatgaattttattttt |
180 |
Q |
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| T |
3845 |
tttgttaacttttactttatgagatttacttgaagagagaaagttatgagtagttacacatgattttttttttt |
3772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 581238 - 581292
Alignment:
| Q |
177 |
ttttgttacaaaattttcttaatcttttgacgtttgttttctctctattctaaat |
231 |
Q |
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| T |
581238 |
ttttgttacaaaataatctcaatcttttgacggttattttctctcttttctaaat |
581292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 1476783 - 1476737
Alignment:
| Q |
176 |
tttttgttacaaaattttcttaatcttttgacgtttgttttctctct |
222 |
Q |
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| T |
1476783 |
tttttgttacaaaattatctaaatcttttgacatttattttctctct |
1476737 |
T |
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