View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_346 (Length: 232)
Name: NF11557A_low_346
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_346 |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 17436812 - 17436623
Alignment:
| Q |
12 |
aatatataatttacacatttcattgtaggttctatgcttaatggaatcttgaacaaaagtctagttttcaa-accagttttattttgaagagnnnnnnnc |
110 |
Q |
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| T |
17436812 |
aatatataatttacacatttcattgtaggttctatgcttaatggaatcttgaacaaaagtctagttttcaagacaagttttattttgaagagtttttttc |
17436713 |
T |
|
| Q |
111 |
-ctcaatattttccactataaataaccaatggcgaccattcttatattggaactcatattaattatttcacctaacctctttctttttcc |
199 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| | ||||||||||||||||||| |
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| T |
17436712 |
tctcaatattttccactataaataaccaatggcaaccattcttatattggaactcatattaactattgcgactaacctctttctttttcc |
17436623 |
T |
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