View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_349 (Length: 231)
Name: NF11557A_low_349
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_349 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 38145217 - 38145410
Alignment:
| Q |
17 |
atttcatacaacaatttacactccaaatgaaccttcattcgcaaccatccttgattccttagcaatgaacctaaggtgtttggcaccatctacaccgaaa |
116 |
Q |
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| T |
38145217 |
atttcatacaacaatttacactccaaatgaaccttcattcgcaaccatccttgattccttagcaatgaacctaaggtgtttggcaccatctacaccgaaa |
38145316 |
T |
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| Q |
117 |
cccgaattcatattcacaccctcccaagattcccatgtccaagcagccgtaatttgctccaagaaacttggaatccatctaagagtaagaagtg |
210 |
Q |
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| T |
38145317 |
cccgaattcatattcacaccctcccaagattcccatgtccaagcagccgtaatttgctccaagaaacttggaatccatctaagagtaagaagtg |
38145410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 87 - 210
Target Start/End: Complemental strand, 11787533 - 11787410
Alignment:
| Q |
87 |
ctaaggtgtttggcaccatctacaccgaaacccgaattcatattcacaccctcccaagattcccatgtccaagcagccgtaatttgctccaagaaacttg |
186 |
Q |
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| T |
11787533 |
ctaaggtatttggtaccttctgctccaaaacccgaattcatattcacacccttaaccgattcacatgtccaagtagctgttacttgttcaaagaaacttg |
11787434 |
T |
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| Q |
187 |
gaatccatctaagagtaagaagtg |
210 |
Q |
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| T |
11787433 |
gtattcatctaagagtaagaagtg |
11787410 |
T |
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