View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_356 (Length: 230)
Name: NF11557A_low_356
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_356 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 2092975 - 2093198
Alignment:
| Q |
8 |
tttcttcataaaaattggcttaacctagatttatacctagtgttttaactaaataatttctgactaaacccacacgtttgctacctaaccaattcctaat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2092975 |
tttcttcataaaaattggcttaacctagatttatacttagtgttttaactaaataatttctgactaaacccacacgtttgctacctaaccaattcctaat |
2093074 |
T |
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| Q |
108 |
ctaatgaagggtataatagt-atttttacttatgatgtaacctatatttattcattcaacttcgtacatttattcacttcactctacatgcatcggctat |
206 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| |
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| T |
2093075 |
ctaatgaagggcataatagtcttttttacttatgatgtaacctatatttattcattcaacttcatacatttattcatttcactctacatgtatcggctat |
2093174 |
T |
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| Q |
207 |
ttctttcttctccaaaacaagagg |
230 |
Q |
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|||||||||||||||||||||||| |
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| T |
2093175 |
ttctttcttctccaaaacaagagg |
2093198 |
T |
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