View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557A_low_361 (Length: 230)
Name: NF11557A_low_361
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_361 |
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| [»] scaffold0430 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 51184457 - 51184241
Alignment:
| Q |
9 |
gacagtggatattgtaaaggcgaaagggggaaaggttacaagagaaccagggtctgtcaaaggtggctctatagtaactgcttccgttgaagatcctagt |
108 |
Q |
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| T |
51184457 |
gacagtagatattgtaaaggcgaaagggggaaaggttacaagagaaccagggtctgtcaaaggtggctctatagtaactgcttccgttgaagatcctagt |
51184358 |
T |
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| Q |
109 |
ggttataggtttgagcttttggagagaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcgaccttgatcgtgtcatagccttctatg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51184357 |
ggttataggtttgagcttttggagagaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcgaccttgatcgtgtcatagccttctatg |
51184258 |
T |
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| Q |
209 |
aaaaagtgagtgtattt |
225 |
Q |
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||||||||||||||||| |
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| T |
51184257 |
aaaaagtgagtgtattt |
51184241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 14172654 - 14172870
Alignment:
| Q |
9 |
gacagtggatattgtaaaggcgaaagggggaaaggttacaagagaaccagggtctgtcaaaggtggctctatagtaactgcttccgttgaagatcctagt |
108 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14172654 |
gacagtagatattgtaaaggcgaaagggggaaaggttacaagagaaccagggtctgtcataggtggctctatagtaactgcttccgttgaagatcctagt |
14172753 |
T |
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| Q |
109 |
ggttataggtttgagcttttggagagaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcgaccttgatcgtgtcatagccttctatg |
208 |
Q |
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| T |
14172754 |
ggttataggtttaagcttttggagagaagaactactcgtgaacccttatgcaaagtgatgcttcgagtaggtgaccttgatcgtgtcatagccttctatg |
14172853 |
T |
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| Q |
209 |
aaaaagtgagtgtattt |
225 |
Q |
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| T |
14172854 |
aaaaagtgagtgtattt |
14172870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 122 - 225
Target Start/End: Original strand, 48010932 - 48011035
Alignment:
| Q |
122 |
agcttttggagagaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcgaccttgatcgtgtcatagccttctatgaaaaagtgagtgt |
221 |
Q |
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||||||||| | |||||||| | || |||||| |||||||||||||||||| |||||||| ||||||||||||| |||||||||||||| |||||||| | |
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| T |
48010932 |
agcttttggggtgaagacctgctcgcgaacccctatgcaaagtgatgcttcaagtaggcggccttgatcgtgtcgtagccttctatgaataagtgagttt |
48011031 |
T |
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| Q |
222 |
attt |
225 |
Q |
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|||| |
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| T |
48011032 |
attt |
48011035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0430 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0430
Description:
Target: scaffold0430; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 842 - 1050
Alignment:
| Q |
17 |
atattgtaaaggcgaaagggggaaaggttacaagagaaccagggtctgtcaaaggtggctctatagtaactgcttccgttgaagatcctagtggttatag |
116 |
Q |
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|||||||||||| ||| |||||||||||| ||||||| | | |||| |||| ||| |||| ||||||||||| ||||||||||||||||| |||| |
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| T |
842 |
atattgtaaaggaaaaatggggaaaggttatgagagaactggagcctgttaaagatggttctacagtaactgcttttattgaagatcctagtggtgatag |
941 |
T |
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| Q |
117 |
gtttgagcttttggagagaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcgaccttgatcgtgtcatagccttctatgaaaaagtg |
216 |
Q |
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|||||||||||||| |||||||| ||| |||||||||||||||||||||||||||| || || | |||||||| |||||||||||||||||||||||||| |
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| T |
942 |
gtttgagcttttggggagaagacttactcgtgaacccttatgcaaagtgatgcttcaagcagacaaccttgattgtgtcatagccttctatgaaaaagtg |
1041 |
T |
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| Q |
217 |
agtgtattt |
225 |
Q |
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||||||||| |
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| T |
1042 |
agtgtattt |
1050 |
T |
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