View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11557A_low_362 (Length: 230)
Name: NF11557A_low_362
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557A_low_362 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 32789804 - 32789581
Alignment:
| Q |
1 |
aacaagagagagaaactttaaccctaacctaacaacattttcttcaatggaaagtgtaacgcattctcgtcaccaccaaccaaacaaagtctctctcacg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32789804 |
aacaagagagagaaactttaaccctaacctaacaacattttcttcaatggaaagtgtaacgcattctcgtcaccaccaaccaaacaaagtctctctcgcg |
32789705 |
T |
|
| Q |
101 |
cttcccaagaaactcacctccaacggttctctatacgacgacgtttacggtggtcctccgaagttcaccggttcctccatctcaccgcggtttgaagact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32789704 |
cttcccaagaaactcacctccaacggttctctatacgacgacgtttacggtggtcctccgaagttcaccggttcctccatctcaccgcggtttgaagact |
32789605 |
T |
|
| Q |
201 |
acggcgagattttcgccagctttc |
224 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
32789604 |
acggcgagattttcgcaagctttc |
32789581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University